-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1247

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 186, 376
Sorry, prediction Augustus_model.g41593.t1 fails validation.
(GGA)	 AG	186-376	GT	AGG
(TGC)	 AG	660-767	GT	ATG
(AAG)	 AG	1891-2037	GT	AGG
(TCT)	 AG	2479-2847	GA	AGG
-recovered Augustus_model.g41593.t1, terminal, 2479, 2847
-recovered Augustus_model.g41593.t1, internal, 186, 376
-recovered Augustus_model.g41593.t1, internal, 660, 767
-recovered Augustus_model.g41593.t1, internal, 1891, 2037
Couldn't classify 188, 376
Couldn't classify 660, 767
Sorry, prediction pasa_asmbl_9239.p1 fails validation.
(AAG)	 GG	188-376	GT	AGG
(TGC)	 AG	660-767	GT	ATG
-recovered pasa_asmbl_9239.p1, internal, 660, 767
Valid prediction for GeneMark_model.109092_t
Couldn't classify 186, 376
Couldn't classify 2479, 2843
Sorry, prediction snap_scaffold_1247-snap.1-T1 fails validation.
(GGA)	 AG	186-376	GT	AGG
(TGC)	 AG	660-767	GT	ATG
(AAG)	 AG	1891-2037	GT	AGG
(TCT)	 AG	2479-2843	GT	AGG
-recovered snap_scaffold_1247-snap.1-T1, internal, 186, 376
-recovered snap_scaffold_1247-snap.1-T1, internal, 660, 767
-recovered snap_scaffold_1247-snap.1-T1, internal, 1891, 2037
-recovered snap_scaffold_1247-snap.1-T1, internal, 2479, 2843
Valid prediction for GlimmerHMM_glimmerT_62542-T1
Valid prediction for GeneMark_model.109090_t
Couldn't classify 1891, 2037
Couldn't classify 2479, 2841
Sorry, prediction pasa_asmbl_9240.p1 fails validation.
(AAG)	 AG	1891-2037	GT	AGG
(TCT)	 AG	2479-2841	AG	ACA
-recovered pasa_asmbl_9240.p1, internal, 1891, 2037

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109091_t
Valid prediction for GeneMark_model.109089_t
Valid prediction for snap_scaffold_1247-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2843, rend_intergenic: 236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2861
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2843, rend_intergenic: 236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support