-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1245

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109086_t
Couldn't classify 2311, 2416
Sorry, prediction GeneMark_model.109087_t fails validation.
(ATG)	 GT	2277-2290	GT	GGG
(ATG)	 AG	2311-2416	GT	CCG
-recovered GeneMark_model.109087_t, initial, 2277, 2290
-recovered GeneMark_model.109087_t, initial, 2311, 2416
-recovered GeneMark_model.109087_t, internal, 2311, 2416

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41592.t1
Couldn't classify 1771, 1904
Sorry, prediction GeneMark_model.109085_t fails validation.
(ATG)	 TC	1063-1218	GT	TAG
(AGT)	 AG	1771-1904	GT	AAG
-recovered GeneMark_model.109085_t, initial, 1063, 1218
-recovered GeneMark_model.109085_t, internal, 1771, 1904
Couldn't classify 1044, 1218
Sorry, prediction GlimmerHMM_glimmerT_62540-T1 fails validation.
(GTT)	 AG	1044-1218	GT	TAG
(AGT)	 AG	1771-1929	TG	GAT
-recovered GlimmerHMM_glimmerT_62540-T1, terminal, 1771, 1929
-recovered GlimmerHMM_glimmerT_62540-T1, internal, 1044, 1218
Couldn't classify 1771, 1904
Sorry, prediction snap_scaffold_1245-snap.1-T1 fails validation.
(ATG)	 TA	357-433	GT	AGG
(GTT)	 AG	1044-1218	GT	TAG
(AGT)	 AG	1771-1904	GT	AAG
-recovered snap_scaffold_1245-snap.1-T1, initial, 357, 433
-recovered snap_scaffold_1245-snap.1-T1, internal, 1044, 1218
-recovered snap_scaffold_1245-snap.1-T1, internal, 1771, 1904

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2866
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support