-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1244

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 139, 243
Sorry, prediction Augustus_model.g41591.t1 fails validation.
(AAC)	 AG	139-243	GT	GGG
(ATG)	 AG	977-1085	GT	ACG
(AAG)	 AG	2754-2773	AC	AGA
-recovered Augustus_model.g41591.t1, initial, 977, 1085
-recovered Augustus_model.g41591.t1, terminal, 2754, 2773
-recovered Augustus_model.g41591.t1, internal, 139, 243
-recovered Augustus_model.g41591.t1, internal, 977, 1085
Couldn't classify 977, 1085
Sorry, prediction GlimmerHMM_glimmerT_62539-T1 fails validation.
(ATG)	 GG	184-243	GT	GGG
(ATG)	 AG	977-1085	GT	ACG
-recovered GlimmerHMM_glimmerT_62539-T1, initial, 184, 243
-recovered GlimmerHMM_glimmerT_62539-T1, initial, 977, 1085
-recovered GlimmerHMM_glimmerT_62539-T1, internal, 977, 1085
Couldn't classify 2627, 2677
Sorry, prediction GeneMark_model.109084_t fails validation.
(ATG)	 GG	184-243	GT	GGG
(ATG)	 AG	977-1056	GT	CTG
(AAC)	 AG	1080-1085	GT	ACG
(AGA)	 AG	2493-2501	GT	CTG
(AGA)	 AG	2539-2589	GT	CAG
(AGT)	 AG	2627-2677	GT	CTG
-recovered GeneMark_model.109084_t, initial, 184, 243
-recovered GeneMark_model.109084_t, initial, 977, 1056
-recovered GeneMark_model.109084_t, internal, 977, 1056
-recovered GeneMark_model.109084_t, internal, 1080, 1085
-recovered GeneMark_model.109084_t, internal, 2493, 2501
-recovered GeneMark_model.109084_t, internal, 2539, 2589
-recovered GeneMark_model.109084_t, internal, 2627, 2677
Couldn't classify 139, 243
Couldn't classify 977, 1085
Sorry, prediction snap_scaffold_1244-snap.1-T1 fails validation.
(AAC)	 AG	139-243	GT	GGG
(ATG)	 AG	977-1085	GT	ACG
-recovered snap_scaffold_1244-snap.1-T1, initial, 977, 1085
-recovered snap_scaffold_1244-snap.1-T1, internal, 139, 243
-recovered snap_scaffold_1244-snap.1-T1, internal, 977, 1085

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 434, 458
Couldn't classify 1314, 1436
Sorry, prediction snap_scaffold_1244-snap.2-T1 fails validation.
(AGT)	 AG	434-458	GT	TGG
(CGT)	 AG	982-1110	GT	TGG
(CAT)	 AG	1314-1436	GT	ACG
-recovered snap_scaffold_1244-snap.2-T1, internal, 434, 458
-recovered snap_scaffold_1244-snap.2-T1, internal, 982, 1110
-recovered snap_scaffold_1244-snap.2-T1, internal, 1314, 1436

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2872
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support