-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1243

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 422, 544
Sorry, prediction GeneMark_model.109083_t fails validation.
(TCG)	 AG	422-544	GT	TGG
-recovered GeneMark_model.109083_t, internal, 422, 544
Couldn't classify 422, 544
Sorry, prediction Augustus_model.g41590.t1 fails validation.
(TCG)	 AG	422-544	GT	TGG
(ACT)	 AG	2750-2779	CA	AGC
-recovered Augustus_model.g41590.t1, terminal, 2750, 2779
-recovered Augustus_model.g41590.t1, internal, 422, 544

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2872
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support