-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1241

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 30, 53
Sorry, prediction GeneMark_model.109080_t fails validation.
(GTC)	 AG	30-53	GT	GAG
(GTG)	 AG	79-84	GT	TGG
(CCT)	 AG	1054-1071	GT	GGG
(AAG)	 AG	1095-1106	GT	GTG
(CTG)	 AG	1185-1190	GT	AGG
(GCT)	 AG	1335-1398	TA	GAT
-recovered GeneMark_model.109080_t, terminal, 1335, 1398
-recovered GeneMark_model.109080_t, internal, 30, 53
-recovered GeneMark_model.109080_t, internal, 79, 84
-recovered GeneMark_model.109080_t, internal, 1054, 1071
-recovered GeneMark_model.109080_t, internal, 1095, 1106
-recovered GeneMark_model.109080_t, internal, 1185, 1190
Couldn't classify 1003, 1071
Couldn't classify 1993, 2132
Sorry, prediction snap_scaffold_1241-snap.1-T1 fails validation.
(GGA)	 AG	1003-1071	GT	GGG
(GCT)	 AG	1335-1454	GT	ATG
(CCC)	 AG	1720-1814	GT	AAG
(TGC)	 AG	1993-2132	GT	CGG
-recovered snap_scaffold_1241-snap.1-T1, internal, 1003, 1071
-recovered snap_scaffold_1241-snap.1-T1, internal, 1335, 1454
-recovered snap_scaffold_1241-snap.1-T1, internal, 1720, 1814
-recovered snap_scaffold_1241-snap.1-T1, internal, 1993, 2132
Valid prediction for Augustus_model.g41589.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.109081_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2877
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support