-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1240

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109078_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 242, 316
Sorry, prediction GeneMark_model.109079_t fails validation.
(AGG)	 AG	242-316	GT	GAG
(GGA)	 AG	597-707	GC	AGG
(AGA)	 AG	738-833	GC	AGG
(GAG)	 AG	864-953	GT	GAG
(GCC)	 AG	978-1058	GC	AGG
(GCA)	 AG	1085-1108	GT	AGG
(GCA)	 AG	1131-1188	CG	AGC
-recovered GeneMark_model.109079_t, terminal, 1131, 1188
-recovered GeneMark_model.109079_t, internal, 242, 316
-recovered GeneMark_model.109079_t, internal, 597, 707
-recovered GeneMark_model.109079_t, internal, 738, 833
-recovered GeneMark_model.109079_t, internal, 864, 953
-recovered GeneMark_model.109079_t, internal, 978, 1058
-recovered GeneMark_model.109079_t, internal, 1085, 1108
Valid prediction for GeneMark_model.109077_t
Couldn't classify 493, 1108
Sorry, prediction snap_scaffold_1240-snap.1-T1 fails validation.
(CTT)	 AG	493-1108	GT	AGG
-recovered snap_scaffold_1240-snap.1-T1, internal, 493, 1108

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2878
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support