-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1239

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62538-T1
Valid prediction for GeneMark_model.109076_t
Couldn't classify 1889, 2025
Couldn't classify 2357, 2560
Sorry, prediction snap_scaffold_1239-snap.1-T1 fails validation.
(GGG)	 AG	1889-2025	GT	GGG
(GAA)	 AG	2357-2560	GT	ATG
-recovered snap_scaffold_1239-snap.1-T1, internal, 1889, 2025
-recovered snap_scaffold_1239-snap.1-T1, internal, 2357, 2560

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1761, 1898
Sorry, prediction GeneMark_model.109075_t fails validation.
(ATG)	 AC	1713-1729	GT	AAG
(GGT)	 AG	1761-1898	GT	CAG
-recovered GeneMark_model.109075_t, initial, 1713, 1729
-recovered GeneMark_model.109075_t, internal, 1761, 1898

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2884
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support