-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1237

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 74, 135
Couldn't classify 2420, 2653
Sorry, prediction snap_scaffold_1237-snap.2-T1 fails validation.
(GGC)	 AG	74-135	GT	CGG
(AGC)	 AG	168-286	GT	GGG
(AAG)	 AG	2420-2653	GT	CGG
-recovered snap_scaffold_1237-snap.2-T1, internal, 74, 135
-recovered snap_scaffold_1237-snap.2-T1, internal, 168, 286
-recovered snap_scaffold_1237-snap.2-T1, internal, 2420, 2653
Couldn't classify 74, 135
Sorry, prediction GeneMark_model.109073_t fails validation.
(GGC)	 AG	74-135	GT	CGG
(ACA)	 AG	184-225	GT	GGG
(AGG)	 AG	248-373	GT	ACG
(AAA)	 AG	433-441	GT	GAG
(AAA)	 AG	469-477	GT	AAG
(TGA)	 AG	499-651	GT	GTG
(GTG)	 AG	885-896	GT	GAG
(GGT)	 AG	919-931	GA	AGG
-recovered GeneMark_model.109073_t, terminal, 885, 896
-recovered GeneMark_model.109073_t, terminal, 919, 931
-recovered GeneMark_model.109073_t, internal, 74, 135
-recovered GeneMark_model.109073_t, internal, 184, 225
-recovered GeneMark_model.109073_t, internal, 248, 373
-recovered GeneMark_model.109073_t, internal, 433, 441
-recovered GeneMark_model.109073_t, internal, 469, 477
-recovered GeneMark_model.109073_t, internal, 499, 651
-recovered GeneMark_model.109073_t, internal, 885, 896

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2631, 2795
Sorry, prediction Augustus_model.g41588.t1 fails validation.
(ATG)	 GC	314-561	GT	CAG
(TCT)	 AG	2631-2795	GT	CCG
-recovered Augustus_model.g41588.t1, initial, 314, 561
-recovered Augustus_model.g41588.t1, internal, 2631, 2795
Couldn't classify 420, 430
Sorry, prediction GeneMark_model.109074_t fails validation.
(GTC)	 AG	420-430	GT	AGG
(CTG)	 AG	453-561	GT	CAG
(GGA)	 AG	634-649	GG	AGG
-recovered GeneMark_model.109074_t, terminal, 634, 649
-recovered GeneMark_model.109074_t, internal, 420, 430
-recovered GeneMark_model.109074_t, internal, 453, 561
Couldn't classify 2627, 2833
Sorry, prediction snap_scaffold_1237-snap.1-T1 fails validation.
(ATG)	 TA	565-628	GT	GAG
(CCA)	 AG	2627-2833	GT	GCG
-recovered snap_scaffold_1237-snap.1-T1, initial, 565, 628
-recovered snap_scaffold_1237-snap.1-T1, internal, 2627, 2833
Valid prediction for GlimmerHMM_glimmerT_62537-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62537-T1 292-565-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2331, rend_intergenic: 74  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2895
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 2331, rend_intergenic: 74  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support