-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1234

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 452, 638
Sorry, prediction snap_scaffold_1234-snap.1-T1 fails validation.
(AGG)	 AG	452-638	GT	AGG
-recovered snap_scaffold_1234-snap.1-T1, internal, 452, 638
Couldn't classify 22, 41
Couldn't classify 1988, 2187
Sorry, prediction GeneMark_model.109069_t fails validation.
(AGA)	 AG	22-41	GT	AGG
(AGT)	 AG	62-67	GT	GTG
(AGA)	 AG	88-153	GT	GAG
(AGA)	 AG	255-296	GT	AGG
(AGG)	 AG	336-453	GT	AGG
(CAG)	 AG	534-638	GT	AGG
(CTC)	 AG	742-865	GC	CAG
(CTG)	 AG	1988-2187	GT	AAG
-recovered GeneMark_model.109069_t, internal, 22, 41
-recovered GeneMark_model.109069_t, internal, 62, 67
-recovered GeneMark_model.109069_t, internal, 88, 153
-recovered GeneMark_model.109069_t, internal, 255, 296
-recovered GeneMark_model.109069_t, internal, 336, 453
-recovered GeneMark_model.109069_t, internal, 534, 638
-recovered GeneMark_model.109069_t, internal, 742, 865
-recovered GeneMark_model.109069_t, internal, 1988, 2187

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2903
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support