-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1233

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1999, 2016
Couldn't classify 2765, 2812
Sorry, prediction GeneMark_model.109068_t fails validation.
(GGA)	 AG	1999-2016	GT	GGG
(AGA)	 AG	2043-2063	GT	GAG
(AGA)	 AG	2087-2188	GT	ACG
(ATA)	 AG	2218-2296	GT	GAG
(AGA)	 AG	2352-2458	GT	GCG
(GGA)	 AG	2765-2812	GC	GGG
-recovered GeneMark_model.109068_t, internal, 1999, 2016
-recovered GeneMark_model.109068_t, internal, 2043, 2063
-recovered GeneMark_model.109068_t, internal, 2087, 2188
-recovered GeneMark_model.109068_t, internal, 2218, 2296
-recovered GeneMark_model.109068_t, internal, 2352, 2458
-recovered GeneMark_model.109068_t, internal, 2765, 2812

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2904
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support