-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1232

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1073, 1131
Couldn't classify 2425, 2529
Sorry, prediction snap_scaffold_1232-snap.2-T1 fails validation.
(ACC)	 AG	1073-1131	GT	AGG
(ATG)	 AG	1378-1569	GT	CGG
(CTT)	 AG	2425-2529	GT	TGG
-recovered snap_scaffold_1232-snap.2-T1, initial, 1378, 1569
-recovered snap_scaffold_1232-snap.2-T1, internal, 1073, 1131
-recovered snap_scaffold_1232-snap.2-T1, internal, 1378, 1569
-recovered snap_scaffold_1232-snap.2-T1, internal, 2425, 2529
Couldn't classify 1073, 1131
Sorry, prediction Augustus_model.g41586.t1 fails validation.
(ACC)	 AG	1073-1131	GT	AGG
(ATG)	 AG	1450-1569	GT	CGG
(CTT)	 AG	2425-2559	CT	AGC
-recovered Augustus_model.g41586.t1, initial, 1450, 1569
-recovered Augustus_model.g41586.t1, terminal, 2425, 2559
-recovered Augustus_model.g41586.t1, internal, 1073, 1131
-recovered Augustus_model.g41586.t1, internal, 1450, 1569
Couldn't classify 2425, 2529
Sorry, prediction GlimmerHMM_glimmerT_62534-T1 fails validation.
(ATG)	 TC	1312-1569	GT	CGG
(CTT)	 AG	2425-2529	GT	TGG
-recovered GlimmerHMM_glimmerT_62534-T1, initial, 1312, 1569
-recovered GlimmerHMM_glimmerT_62534-T1, internal, 2425, 2529

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 630, 647
Sorry, prediction GeneMark_model.109067_t fails validation.
(TCC)	 AG	630-647	GT	GGG
(GGT)	 AG	671-749	GT	AGG
(CTT)	 AG	780-962	TT	GAT
-recovered GeneMark_model.109067_t, terminal, 780, 962
-recovered GeneMark_model.109067_t, internal, 630, 647
-recovered GeneMark_model.109067_t, internal, 671, 749
Valid prediction for GeneMark_model.109065_t
Couldn't classify 606, 749
Couldn't classify 2662, 2802
Sorry, prediction snap_scaffold_1232-snap.1-T1 fails validation.
(CAA)	 AG	606-749	GT	AGG
(CCT)	 AG	787-927	GT	AGG
(GTG)	 AG	1295-1602	GT	ATG
(CTA)	 AG	2662-2802	GT	CAG
-recovered snap_scaffold_1232-snap.1-T1, internal, 606, 749
-recovered snap_scaffold_1232-snap.1-T1, internal, 787, 927
-recovered snap_scaffold_1232-snap.1-T1, internal, 1295, 1602
-recovered snap_scaffold_1232-snap.1-T1, internal, 2662, 2802

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2302, rend_intergenic: 1073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2907
-exon list size: 28


building trellis

3.3    
6.7    
10.0    
13.3    
16.7    
20.0    
23.3    
26.7    
30.0    
33.3    
36.7    
40.0    
43.3    
46.7    
50.0    
53.3    
56.7    
60.0    
63.3    
66.7    
70.0    
73.3    
76.7    
80.0    
83.3    
86.7    
90.0    
93.3    
96.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2302, rend_intergenic: 1073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support