-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1231

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1231-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 154, 239
Couldn't classify 1993, 2235
Sorry, prediction GeneMark_model.109064_t fails validation.
(TCT)	 AG	154-239	GT	GGG
(AAA)	 AG	308-468	GT	GCG
(AGC)	 AG	581-623	GT	GAG
(AGA)	 AG	669-786	GT	CTG
(CCC)	 AG	1691-1826	GT	CGG
(GGG)	 AG	1938-1947	GT	GCG
(CGC)	 AG	1993-2235	GT	CGG
-recovered GeneMark_model.109064_t, internal, 154, 239
-recovered GeneMark_model.109064_t, internal, 308, 468
-recovered GeneMark_model.109064_t, internal, 581, 623
-recovered GeneMark_model.109064_t, internal, 669, 786
-recovered GeneMark_model.109064_t, internal, 1691, 1826
-recovered GeneMark_model.109064_t, internal, 1938, 1947
-recovered GeneMark_model.109064_t, internal, 1993, 2235
Valid prediction for GlimmerHMM_glimmerT_62533-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2910
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support