-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1230

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 122, 230
Couldn't classify 378, 610
Sorry, prediction snap_scaffold_1230-snap.1-T1 fails validation.
(CTG)	 AG	122-230	GT	GGG
(CCA)	 AG	378-610	GT	AAG
-recovered snap_scaffold_1230-snap.1-T1, internal, 122, 230
-recovered snap_scaffold_1230-snap.1-T1, internal, 378, 610
Couldn't classify 467, 514
Sorry, prediction GeneMark_model.109062_t fails validation.
(GAG)	 AG	467-514	GT	AGG
(ATC)	 AG	563-650	CC	AAC
-recovered GeneMark_model.109062_t, terminal, 563, 650
-recovered GeneMark_model.109062_t, internal, 467, 514

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 275, 365
Sorry, prediction GeneMark_model.109063_t fails validation.
(GCT)	 AG	275-365	GT	GGG
(GGA)	 AG	1133-1199	TG	GAT
-recovered GeneMark_model.109063_t, terminal, 1133, 1199
-recovered GeneMark_model.109063_t, internal, 275, 365
Couldn't classify 1945, 2241
Sorry, prediction snap_scaffold_1230-snap.2-T1 fails validation.
(ATG)	 GA	1186-1290	GT	CGG
(GAG)	 AG	1945-2241	GT	GAG
-recovered snap_scaffold_1230-snap.2-T1, initial, 1186, 1290
-recovered snap_scaffold_1230-snap.2-T1, internal, 1945, 2241

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2915
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support