-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_123

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106653_t
Couldn't classify 14151, 14230
Sorry, prediction snap_scaffold_123-snap.2-T1 fails validation.
(ATG)	 GC	5883-5975	GT	AGG
(ATC)	 AG	8579-8662	GT	TGG
(GCC)	 AG	9342-9701	GT	AGG
(AGC)	 AG	10827-10964	GT	AGG
(GTT)	 AG	14151-14230	GT	TGG
-recovered snap_scaffold_123-snap.2-T1, initial, 5883, 5975
-recovered snap_scaffold_123-snap.2-T1, internal, 8579, 8662
-recovered snap_scaffold_123-snap.2-T1, internal, 9342, 9701
-recovered snap_scaffold_123-snap.2-T1, internal, 10827, 10964
-recovered snap_scaffold_123-snap.2-T1, internal, 14151, 14230
Valid prediction for GlimmerHMM_glimmerT_61336-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61336-T1 7282-7610-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.106655_t
Valid prediction for GlimmerHMM_glimmerT_61337-T1
Couldn't classify 3468, 3528
Sorry, prediction pasa_asmbl_9236.p1 fails validation.
(AGC)	 AC	3468-3528	GT	CGG
(GGA)	 AG	3653-3703	GT	AGG
(AGG)	 AG	4108-4192	GT	AAG
(GTT)	 AG	5686-5812	GT	AGG
(TAC)	 AG	6347-6436	CC	GAC
-recovered pasa_asmbl_9236.p1, terminal, 6347, 6436
-recovered pasa_asmbl_9236.p1, internal, 3653, 3703
-recovered pasa_asmbl_9236.p1, internal, 4108, 4192
-recovered pasa_asmbl_9236.p1, internal, 5686, 5812
Couldn't classify 7402, 7713
Sorry, prediction pasa_asmbl_9237.p1 fails validation.
(ACT)	 AC	7402-7713	TG	CAT
Valid prediction for HiQ_model.g40799.t1
Couldn't classify 9633, 9679
Sorry, prediction snap_scaffold_123-snap.1-T1 fails validation.
(ATG)	 TT	3474-3528	GT	CGG
(GGA)	 AG	3653-3703	GT	AGG
(AGG)	 AG	4108-4192	GT	AAG
(GTT)	 AG	5686-5812	GT	AGG
(TAC)	 AG	6347-6410	GT	GGG
(AGT)	 AG	9633-9679	GT	TGG
-recovered snap_scaffold_123-snap.1-T1, initial, 3474, 3528
-recovered snap_scaffold_123-snap.1-T1, internal, 3653, 3703
-recovered snap_scaffold_123-snap.1-T1, internal, 4108, 4192
-recovered snap_scaffold_123-snap.1-T1, internal, 5686, 5812
-recovered snap_scaffold_123-snap.1-T1, internal, 6347, 6410
-recovered snap_scaffold_123-snap.1-T1, internal, 9633, 9679
Valid prediction for GlimmerHMM_glimmerT_61338-T1
Valid prediction for GeneMark_model.106652_t
Valid prediction for GeneMark_model.106654_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10871, rend_intergenic: 5883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 14344
-exon list size: 44


building trellis

2.2    
4.3    
6.5    
8.7    
10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 10871, rend_intergenic: 5883  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support