-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1229

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 17, 53
Couldn't classify 822, 883
Sorry, prediction GeneMark_model.109061_t fails validation.
(GAG)	 AG	17-53	GT	GGG
(ACT)	 AG	505-525	GT	GAG
(GCC)	 AG	725-748	GT	CGG
(GGC)	 AG	776-784	GT	TGG
(GGT)	 AG	822-883	GT	ATG
-recovered GeneMark_model.109061_t, internal, 17, 53
-recovered GeneMark_model.109061_t, internal, 505, 525
-recovered GeneMark_model.109061_t, internal, 725, 748
-recovered GeneMark_model.109061_t, internal, 776, 784
-recovered GeneMark_model.109061_t, internal, 822, 883

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2922
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support