-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1228

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 24, 305
Sorry, prediction GeneMark_model.109059_t fails validation.
(GCT)	 AG	24-305	GT	AAG
(AGG)	 AG	337-364	CG	AGC
add_exon() Sorry, GeneMark_model.109059_t 24-305-terminal-1 is invalid.
-recovered GeneMark_model.109059_t, terminal, 24, 305
-recovered GeneMark_model.109059_t, terminal, 337, 364
-recovered GeneMark_model.109059_t, internal, 24, 305
Valid prediction for Augustus_model.g41585.t1
Valid prediction for GlimmerHMM_glimmerT_62532-T1
Couldn't classify 24, 433
Sorry, prediction snap_scaffold_1228-snap.1-T1 fails validation.
(GCT)	 AG	24-433	GT	AGG
(TCT)	 AG	2483-2616	GT	AGG
(CGC)	 AG	2719-2802	TT	AAT
-recovered snap_scaffold_1228-snap.1-T1, terminal, 2719, 2802
-recovered snap_scaffold_1228-snap.1-T1, internal, 24, 433
-recovered snap_scaffold_1228-snap.1-T1, internal, 2483, 2616

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2115, 2165
Sorry, prediction GeneMark_model.109060_t fails validation.
(GGG)	 AG	2115-2165	GT	GAG
(GGA)	 AG	2398-2509	AA	GAA
-recovered GeneMark_model.109060_t, terminal, 2398, 2509
-recovered GeneMark_model.109060_t, internal, 2115, 2165

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2924
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support