-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1225

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109055_t
Couldn't classify 492, 633
Sorry, prediction snap_scaffold_1225-snap.2-T1 fails validation.
(AGC)	 AG	492-633	GT	ACG
(GCT)	 AG	2135-2227	TG	AGT
-recovered snap_scaffold_1225-snap.2-T1, terminal, 2135, 2227
-recovered snap_scaffold_1225-snap.2-T1, internal, 492, 633

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2737, 2881
Sorry, prediction GeneMark_model.109054_t fails validation.
(ATG)	 GC	2317-2547	GT	AGG
(GAG)	 AG	2737-2881	GT	ATG
-recovered GeneMark_model.109054_t, initial, 2317, 2547
-recovered GeneMark_model.109054_t, internal, 2737, 2881
Couldn't classify 71, 149
Couldn't classify 2737, 2881
Sorry, prediction snap_scaffold_1225-snap.1-T1 fails validation.
(GTA)	 AG	71-149	GT	AGG
(CTT)	 AG	710-829	GT	CCG
(GAG)	 AG	1345-1420	GT	AGG
(CAC)	 AG	2333-2547	GT	AGG
(GAG)	 AG	2737-2881	GT	ATG
-recovered snap_scaffold_1225-snap.1-T1, internal, 71, 149
-recovered snap_scaffold_1225-snap.1-T1, internal, 710, 829
-recovered snap_scaffold_1225-snap.1-T1, internal, 1345, 1420
-recovered snap_scaffold_1225-snap.1-T1, internal, 2333, 2547
-recovered snap_scaffold_1225-snap.1-T1, internal, 2737, 2881
Valid prediction for GlimmerHMM_glimmerT_62530-T1
Couldn't classify 689, 829
Couldn't classify 2737, 2844
Sorry, prediction pasa_asmbl_9234.p1 fails validation.
(TGT)	 TG	689-829	GT	CCG
(GAG)	 AG	1345-1420	GT	AGG
(CAC)	 AG	2333-2547	GT	AGG
(GAG)	 AG	2737-2844	AT	CTA
-recovered pasa_asmbl_9234.p1, internal, 1345, 1420
-recovered pasa_asmbl_9234.p1, internal, 2333, 2547
Couldn't classify 698, 829
Sorry, prediction GlimmerHMM_glimmerT_62531-T1 fails validation.
(CCT)	 AG	698-829	GT	CCG
(ACT)	 AG	1311-1325	CA	AAC
-recovered GlimmerHMM_glimmerT_62531-T1, terminal, 1311, 1325
-recovered GlimmerHMM_glimmerT_62531-T1, internal, 698, 829
Couldn't classify 2737, 2846
Sorry, prediction Augustus_model.g41584.t1 fails validation.
(ATG)	 TG	42-149	GT	AGG
(CCT)	 AG	698-829	GT	CCG
(GAG)	 AG	1345-1420	GT	AGG
(CAC)	 AG	2333-2547	GT	AGG
(GAG)	 AG	2737-2846	GT	ATG
-recovered Augustus_model.g41584.t1, initial, 42, 149
-recovered Augustus_model.g41584.t1, internal, 698, 829
-recovered Augustus_model.g41584.t1, internal, 1345, 1420
-recovered Augustus_model.g41584.t1, internal, 2333, 2547
-recovered Augustus_model.g41584.t1, internal, 2737, 2846

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2860, rend_intergenic: 492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2930
-exon list size: 23


building trellis

4.0    
8.0    
12.0    
16.0    
20.0    
24.0    
28.0    
32.0    
36.0    
40.0    
44.0    
48.0    
52.0    
56.0    
60.0    
64.0    
68.0    
72.0    
76.0    
80.0    
84.0    
88.0    
92.0    
96.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2860, rend_intergenic: 492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support