-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1224

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 197, 257
Sorry, prediction snap_scaffold_1224-snap.2-T1 fails validation.
(TAA)	 AG	197-257	GT	AGG
(TTG)	 AG	1998-2546	AG	AAA
-recovered snap_scaffold_1224-snap.2-T1, terminal, 1998, 2546
-recovered snap_scaffold_1224-snap.2-T1, internal, 197, 257
Couldn't classify 148, 280
Couldn't classify 2483, 2542
Sorry, prediction GeneMark_model.109053_t fails validation.
(TTG)	 AG	148-280	GC	GGG
(ACA)	 AG	304-402	GC	GGG
(GCG)	 AG	424-447	GT	TGG
(GGG)	 AG	481-597	GT	CTG
(ACT)	 AG	905-910	GT	TGG
(GGG)	 AG	934-945	GT	AAG
(AGA)	 AG	984-1022	GT	GAG
(AGA)	 AG	1048-1068	GT	GAG
(ATG)	 AG	2081-2377	GT	AAG
(AGG)	 AG	2401-2457	GT	GAG
(AGG)	 AG	2483-2542	GT	CAG
-recovered GeneMark_model.109053_t, initial, 2081, 2377
-recovered GeneMark_model.109053_t, internal, 148, 280
-recovered GeneMark_model.109053_t, internal, 304, 402
-recovered GeneMark_model.109053_t, internal, 424, 447
-recovered GeneMark_model.109053_t, internal, 481, 597
-recovered GeneMark_model.109053_t, internal, 905, 910
-recovered GeneMark_model.109053_t, internal, 934, 945
-recovered GeneMark_model.109053_t, internal, 984, 1022
-recovered GeneMark_model.109053_t, internal, 1048, 1068
-recovered GeneMark_model.109053_t, internal, 2081, 2377
-recovered GeneMark_model.109053_t, internal, 2401, 2457
-recovered GeneMark_model.109053_t, internal, 2483, 2542

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2744, 2929
Sorry, prediction snap_scaffold_1224-snap.1-T1 fails validation.
(AGG)	 AG	2744-2929	GT	AGG
-recovered snap_scaffold_1224-snap.1-T1, internal, 2744, 2929

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2933
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support