-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1223

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1631, 1668
Couldn't classify 2528, 2586
Sorry, prediction snap_scaffold_1223-snap.1-T1 fails validation.
(CCG)	 AG	1631-1668	GT	CCG
(CCG)	 AG	1674-1766	GT	AGG
(GAG)	 AG	2528-2586	GT	AGG
-recovered snap_scaffold_1223-snap.1-T1, internal, 1631, 1668
-recovered snap_scaffold_1223-snap.1-T1, internal, 1674, 1766
-recovered snap_scaffold_1223-snap.1-T1, internal, 2528, 2586
Sorry, intron length (4) is less than minimum required (10)
Couldn't classify 1631, 1668
Couldn't classify 2528, 2586
Sorry, prediction GeneMark_model.109052_t fails validation.
(CCG)	 AG	1631-1668	GT	CCG
(GGC)	 AG	1756-1766	GT	AGG
(AGA)	 AG	2009-2023	GT	ACG
(TGT)	 AG	2135-2146	GT	GAG
(AAG)	 AG	2205-2218	GT	GAG
(GAG)	 AG	2528-2586	GT	AGG
-recovered GeneMark_model.109052_t, internal, 1631, 1668
-recovered GeneMark_model.109052_t, internal, 1756, 1766
-recovered GeneMark_model.109052_t, internal, 2009, 2023
-recovered GeneMark_model.109052_t, internal, 2135, 2146
-recovered GeneMark_model.109052_t, internal, 2205, 2218
-recovered GeneMark_model.109052_t, internal, 2528, 2586

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2937
-exon list size: 18


building trellis

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-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support