-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1222

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109051_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2125, 2238
Sorry, prediction snap_scaffold_1222-snap.1-T1 fails validation.
(ACA)	 AG	2125-2238	GT	GTG
(GGA)	 AG	2732-2812	AA	AAA
-recovered snap_scaffold_1222-snap.1-T1, terminal, 2732, 2812
-recovered snap_scaffold_1222-snap.1-T1, internal, 2125, 2238
Couldn't classify 2799, 2929
Sorry, prediction GeneMark_model.109050_t fails validation.
(ATG)	 AC	2476-2483	GT	GTG
(ACT)	 AG	2717-2740	GT	AGG
(GAG)	 AG	2771-2776	GT	AGG
(AAG)	 AG	2799-2929	GT	GGG
-recovered GeneMark_model.109050_t, initial, 2476, 2483
-recovered GeneMark_model.109050_t, internal, 2717, 2740
-recovered GeneMark_model.109050_t, internal, 2771, 2776
-recovered GeneMark_model.109050_t, internal, 2799, 2929

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2937
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support