-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_122

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 13965, 14139
Sorry, prediction GeneMark_model.106651_t fails validation.
(ATG)	 GA	13726-13760	GT	AGG
(ACC)	 AG	13965-14139	GT	CTG
-recovered GeneMark_model.106651_t, initial, 13726, 13760
-recovered GeneMark_model.106651_t, internal, 13965, 14139
Valid prediction for GeneMark_model.106649_t
Valid prediction for GlimmerHMM_glimmerT_61334-T1
Valid prediction for snap_scaffold_122-snap.1-T1
Valid prediction for GeneMark_model.106648_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1742, 1858
Sorry, prediction GlimmerHMM_glimmerT_61335-T1 fails validation.
(GCC)	 AG	1742-1858	GT	AGG
(CTG)	 AG	1980-2093	GT	AGG
(AGA)	 AG	2534-2637	GT	AGG
(CAT)	 AG	3624-3714	CT	AGC
-recovered GlimmerHMM_glimmerT_61335-T1, terminal, 3624, 3714
-recovered GlimmerHMM_glimmerT_61335-T1, internal, 1742, 1858
-recovered GlimmerHMM_glimmerT_61335-T1, internal, 1980, 2093
-recovered GlimmerHMM_glimmerT_61335-T1, internal, 2534, 2637
Couldn't classify 287, 393
Sorry, prediction snap_scaffold_122-snap.2-T1 fails validation.
(CTC)	 AG	287-393	GT	CGG
(TGG)	 AG	1071-1194	GT	TGG
(GCC)	 AG	1742-1858	GT	AGG
(CTG)	 AG	1980-2093	GT	AGG
(AGA)	 AG	2534-2637	GT	AGG
(ATC)	 AG	3011-3081	GT	TGG
(ACC)	 AG	3455-3486	GT	AGG
(ACA)	 AG	4229-4322	GT	ATG
(ACC)	 AG	7267-7328	GT	GGG
(AAG)	 AG	8267-8365	CA	AGC
-recovered snap_scaffold_122-snap.2-T1, terminal, 8267, 8365
-recovered snap_scaffold_122-snap.2-T1, internal, 287, 393
-recovered snap_scaffold_122-snap.2-T1, internal, 1071, 1194
-recovered snap_scaffold_122-snap.2-T1, internal, 1742, 1858
-recovered snap_scaffold_122-snap.2-T1, internal, 1980, 2093
-recovered snap_scaffold_122-snap.2-T1, internal, 2534, 2637
-recovered snap_scaffold_122-snap.2-T1, internal, 3011, 3081
-recovered snap_scaffold_122-snap.2-T1, internal, 3455, 3486
-recovered snap_scaffold_122-snap.2-T1, internal, 4229, 4322
-recovered snap_scaffold_122-snap.2-T1, internal, 7267, 7328
Couldn't classify 287, 450
Sorry, prediction Augustus_model.g40798.t1 fails validation.
(CTC)	 AG	287-450	GT	GGG
(GCC)	 AG	1742-1858	GT	AGG
(CTG)	 AG	1980-2093	GT	AGG
(AGA)	 AG	2534-2637	GT	AGG
(ATT)	 AG	3405-3486	GT	AGG
(ACA)	 AG	4229-4348	TC	AGT
-recovered Augustus_model.g40798.t1, terminal, 4229, 4348
-recovered Augustus_model.g40798.t1, internal, 287, 450
-recovered Augustus_model.g40798.t1, internal, 1742, 1858
-recovered Augustus_model.g40798.t1, internal, 1980, 2093
-recovered Augustus_model.g40798.t1, internal, 2534, 2637
-recovered Augustus_model.g40798.t1, internal, 3405, 3486
Valid prediction for GeneMark_model.106650_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13611, rend_intergenic: 5995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 14359
-exon list size: 52


building trellis

1.9    
3.7    
5.6    
7.4    
9.3    
11.1    
13.0    
14.8    
16.7    
18.5    
20.4    
22.2    
24.1    
25.9    
27.8    
29.6    
31.5    
33.3    
35.2    
37.0    
38.9    
40.7    
42.6    
44.4    
46.3    
48.1    
50.0    
51.9    
53.7    
55.6    
57.4    
59.3    
61.1    
63.0    
64.8    
66.7    
68.5    
70.4    
72.2    
74.1    
75.9    
77.8    
79.6    
81.5    
83.3    
85.2    
87.0    
88.9    
90.7    
92.6    
94.4    
96.3    
98.1    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 13611, rend_intergenic: 5995  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support