-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1219

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62529-T1
Couldn't classify 13, 146
Sorry, prediction GeneMark_model.109048_t fails validation.
(GAG)	 AG	13-146	GT	AGG
(GAG)	 AG	203-305	GT	AGG
(GAG)	 AG	353-398	TT	GAT
-recovered GeneMark_model.109048_t, terminal, 353, 398
-recovered GeneMark_model.109048_t, internal, 13, 146
-recovered GeneMark_model.109048_t, internal, 203, 305
Couldn't classify 2914, 2929
Sorry, prediction GeneMark_model.109047_t fails validation.
(ATG)	 GA	2735-2883	GT	GGG
(ATG)	 AG	2914-2929	GT	AGG
-recovered GeneMark_model.109047_t, initial, 2735, 2883
-recovered GeneMark_model.109047_t, initial, 2914, 2929
-recovered GeneMark_model.109047_t, internal, 2914, 2929
Valid prediction for snap_scaffold_1219-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2946
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support