-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1215

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 10, 33
Couldn't classify 2924, 2935
Sorry, prediction GeneMark_model.109043_t fails validation.
(GGG)	 AG	10-33	GT	GGG
(AAC)	 AG	59-70	GT	GTG
(ATC)	 AG	94-134	GT	TAG
(CAA)	 AG	1931-1958	GT	GGG
(AGA)	 AG	1986-2087	GT	GAG
(GGC)	 AG	2305-2313	GT	GAG
(AGA)	 AG	2826-2831	GT	TGG
(GGG)	 AG	2854-2865	GT	GGG
(GAG)	 AG	2889-2903	GT	GGG
(GAC)	 AG	2924-2935	GT	GAG
-recovered GeneMark_model.109043_t, terminal, 1986, 2087
-recovered GeneMark_model.109043_t, internal, 10, 33
-recovered GeneMark_model.109043_t, internal, 59, 70
-recovered GeneMark_model.109043_t, internal, 94, 134
-recovered GeneMark_model.109043_t, internal, 1931, 1958
-recovered GeneMark_model.109043_t, internal, 1986, 2087
-recovered GeneMark_model.109043_t, internal, 2305, 2313
-recovered GeneMark_model.109043_t, internal, 2826, 2831
-recovered GeneMark_model.109043_t, internal, 2854, 2865
-recovered GeneMark_model.109043_t, internal, 2889, 2903
-recovered GeneMark_model.109043_t, internal, 2924, 2935

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2959
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support