-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1214

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2355, 2454
Sorry, prediction GeneMark_model.109042_t fails validation.
(ATG)	 AG	288-316	GT	AGG
(AGA)	 AG	504-509	GC	GAG
(GAC)	 AG	538-567	GT	AGG
(AGG)	 AG	826-912	GT	GGG
(GGG)	 AG	934-969	GT	GAG
(GAA)	 AG	994-1107	GT	GGG
(TTT)	 AG	2064-2084	GT	AGG
(AGA)	 AG	2155-2208	GT	AGG
(AGA)	 AG	2355-2454	GT	AAG
-recovered GeneMark_model.109042_t, initial, 288, 316
-recovered GeneMark_model.109042_t, internal, 288, 316
-recovered GeneMark_model.109042_t, internal, 504, 509
-recovered GeneMark_model.109042_t, internal, 538, 567
-recovered GeneMark_model.109042_t, internal, 826, 912
-recovered GeneMark_model.109042_t, internal, 934, 969
-recovered GeneMark_model.109042_t, internal, 994, 1107
-recovered GeneMark_model.109042_t, internal, 2064, 2084
-recovered GeneMark_model.109042_t, internal, 2155, 2208
-recovered GeneMark_model.109042_t, internal, 2355, 2454

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2963
-exon list size: 18


building trellis

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50.0    
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95.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support