-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1213

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62527-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62527-T1 113-297-terminal-1 is invalid.
Couldn't classify 63, 214
Sorry, prediction Augustus_model.g41583.t1 fails validation.
(TCA)	 AG	63-214	GT	AGG
(GTT)	 AG	888-1027	CT	AGC
-recovered Augustus_model.g41583.t1, terminal, 888, 1027
-recovered Augustus_model.g41583.t1, internal, 63, 214
Couldn't classify 67, 177
Sorry, prediction GeneMark_model.109040_t fails validation.
(GAC)	 AG	67-177	GT	GAG
(CAA)	 AG	453-494	TA	AGT
-recovered GeneMark_model.109040_t, terminal, 453, 494
-recovered GeneMark_model.109040_t, internal, 67, 177
Couldn't classify 63, 214
Couldn't classify 888, 1000
Sorry, prediction snap_scaffold_1213-snap.1-T1 fails validation.
(TCA)	 AG	63-214	GT	AGG
(GTT)	 AG	888-1000	GT	AGG
-recovered snap_scaffold_1213-snap.1-T1, internal, 63, 214
-recovered snap_scaffold_1213-snap.1-T1, internal, 888, 1000

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 482, 502
Sorry, prediction GeneMark_model.109041_t fails validation.
(AGA)	 AG	482-502	GT	GGG
(AGA)	 AG	524-538	GT	GGG
(AGA)	 AG	572-586	GT	AGG
(GGT)	 AG	612-686	GT	AGG
(ACA)	 AG	2155-2233	GT	AGG
-recovered GeneMark_model.109041_t, terminal, 2155, 2233
-recovered GeneMark_model.109041_t, internal, 482, 502
-recovered GeneMark_model.109041_t, internal, 524, 538
-recovered GeneMark_model.109041_t, internal, 572, 586
-recovered GeneMark_model.109041_t, internal, 612, 686
-recovered GeneMark_model.109041_t, internal, 2155, 2233

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2966
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support