-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1208

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.109034_t
Couldn't classify 2917, 2964
Sorry, prediction GeneMark_model.109036_t fails validation.
(ATG)	 AG	2629-2663	GT	GAG
(AAA)	 AG	2693-2809	GT	CTG
(AGA)	 AG	2917-2964	GT	GGG
-recovered GeneMark_model.109036_t, initial, 2629, 2663
-recovered GeneMark_model.109036_t, internal, 2629, 2663
-recovered GeneMark_model.109036_t, internal, 2693, 2809
-recovered GeneMark_model.109036_t, internal, 2917, 2964

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2870, 2904
Sorry, prediction GeneMark_model.109033_t fails validation.
(ATG)	 AA	2425-2453	GT	CAG
(AGA)	 AG	2764-2838	GT	AAG
(AGG)	 AG	2870-2904	GT	GCG
-recovered GeneMark_model.109033_t, initial, 2425, 2453
-recovered GeneMark_model.109033_t, internal, 2764, 2838
-recovered GeneMark_model.109033_t, internal, 2870, 2904
Valid prediction for GeneMark_model.109035_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2979
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support