-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1203

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1123, 1244
Sorry, prediction GlimmerHMM_glimmerT_62521-T1 fails validation.
(ATG)	 TG	649-723	GT	AGG
(ATG)	 AG	1123-1244	GT	AGG
-recovered GlimmerHMM_glimmerT_62521-T1, initial, 649, 723
-recovered GlimmerHMM_glimmerT_62521-T1, initial, 1123, 1244
-recovered GlimmerHMM_glimmerT_62521-T1, internal, 1123, 1244
Couldn't classify 19, 104
Sorry, prediction snap_scaffold_1203-snap.1-T1 fails validation.
(GAC)	 AG	19-104	GT	GAG
(TAA)	 AG	192-248	GT	ATG
(GGA)	 AG	423-536	GT	CCG
(GAA)	 AG	615-723	GT	AGG
(ATG)	 AG	1123-1197	GT	AGG
(CAG)	 AG	2164-2202	AG	AAA
-recovered snap_scaffold_1203-snap.1-T1, initial, 1123, 1197
-recovered snap_scaffold_1203-snap.1-T1, terminal, 2164, 2202
-recovered snap_scaffold_1203-snap.1-T1, internal, 19, 104
-recovered snap_scaffold_1203-snap.1-T1, internal, 192, 248
-recovered snap_scaffold_1203-snap.1-T1, internal, 423, 536
-recovered snap_scaffold_1203-snap.1-T1, internal, 615, 723
-recovered snap_scaffold_1203-snap.1-T1, internal, 1123, 1197
Couldn't classify 19, 104
Couldn't classify 1123, 1244
Sorry, prediction GeneMark_model.109030_t fails validation.
(GAC)	 AG	19-104	GT	GAG
(GAA)	 AG	615-723	GT	AGG
(ATG)	 AG	1123-1244	GT	AGG
-recovered GeneMark_model.109030_t, initial, 1123, 1244
-recovered GeneMark_model.109030_t, internal, 19, 104
-recovered GeneMark_model.109030_t, internal, 615, 723
-recovered GeneMark_model.109030_t, internal, 1123, 1244
Couldn't classify 1, 104
Sorry, prediction Augustus_model.g41577.t1 fails validation.
(AAT)	 CT	1-104	GT	GAG
(TAA)	 AG	192-248	GT	ATG
(GAA)	 AG	615-723	GT	AGG
(ATG)	 AG	1123-1197	GT	AGG
(CAG)	 AG	2164-2202	AG	AAA
-recovered Augustus_model.g41577.t1, initial, 1123, 1197
-recovered Augustus_model.g41577.t1, terminal, 2164, 2202
-recovered Augustus_model.g41577.t1, internal, 192, 248
-recovered Augustus_model.g41577.t1, internal, 615, 723
-recovered Augustus_model.g41577.t1, internal, 1123, 1197

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2996
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support