-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1200

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_62519-T1
Valid prediction for GeneMark_model.109025_t
Couldn't classify 241, 350
Sorry, prediction snap_scaffold_1200-snap.1-T1 fails validation.
(GAT)	 AG	241-350	GT	GGG
(GTG)	 AG	1211-1313	GT	AGG
add_exon() Sorry, snap_scaffold_1200-snap.1-T1 1211-1313-terminal-3 is invalid.
-recovered snap_scaffold_1200-snap.1-T1, terminal, 1211, 1313
-recovered snap_scaffold_1200-snap.1-T1, internal, 241, 350
-recovered snap_scaffold_1200-snap.1-T1, internal, 1211, 1313

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 9, 95
Sorry, prediction GeneMark_model.109026_t fails validation.
(GTT)	 AG	9-95	GT	ACG
(TCT)	 AG	791-805	GT	TGG
(GTC)	 AG	904-918	GT	TTG
(TCT)	 AG	1016-1022	GA	GAG
-recovered GeneMark_model.109026_t, terminal, 1016, 1022
-recovered GeneMark_model.109026_t, internal, 9, 95
-recovered GeneMark_model.109026_t, internal, 791, 805
-recovered GeneMark_model.109026_t, internal, 904, 918

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3000
-exon list size: 13


building trellis

6.7    
13.3    
20.0    
26.7    
33.3    
40.0    
46.7    
53.3    
60.0    
66.7    
73.3    
80.0    
86.7    
93.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support