-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_120 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106639_t Couldn't classify 12822, 12960 Sorry, prediction snap_scaffold_120-snap.4-T1 fails validation. (ATG) AG 6553-6571 GT CCG (ACC) AG 11876-12099 GT AGG (CGT) AG 12519-12653 GT AGG (GAG) AG 12822-12960 GT AGG -recovered snap_scaffold_120-snap.4-T1, initial, 6553, 6571 -recovered snap_scaffold_120-snap.4-T1, internal, 6553, 6571 -recovered snap_scaffold_120-snap.4-T1, internal, 11876, 12099 -recovered snap_scaffold_120-snap.4-T1, internal, 12519, 12653 -recovered snap_scaffold_120-snap.4-T1, internal, 12822, 12960 Valid prediction for GeneMark_model.106643_t Couldn't classify 14095, 14104 Sorry, prediction GeneMark_model.106644_t fails validation. (ATG) CC 11935-11997 GT TGG (CGT) AG 12519-12653 GT AGG (GAG) AG 12822-12960 GT AGG (ACG) AG 13147-13171 GT GGG (GGA) AG 13631-13654 GT GAG (CGG) AG 13871-13915 GT GAG (AGA) AG 13937-14017 GT GAG (AAA) AG 14043-14072 GC AGG (AGA) AG 14095-14104 GT ATG -recovered GeneMark_model.106644_t, initial, 11935, 11997 -recovered GeneMark_model.106644_t, internal, 12519, 12653 -recovered GeneMark_model.106644_t, internal, 12822, 12960 -recovered GeneMark_model.106644_t, internal, 13147, 13171 -recovered GeneMark_model.106644_t, internal, 13631, 13654 -recovered GeneMark_model.106644_t, internal, 13871, 13915 -recovered GeneMark_model.106644_t, internal, 13937, 14017 -recovered GeneMark_model.106644_t, internal, 14043, 14072 -recovered GeneMark_model.106644_t, internal, 14095, 14104 Valid prediction for Augustus_model.g40797.t1 Valid prediction for snap_scaffold_120-snap.2-T1 Couldn't classify 12822, 12960 Sorry, prediction GlimmerHMM_glimmerT_61332-T1 fails validation. (ATG) TC 11460-11596 GT AGG (TTT) AG 11898-12099 GT AGG (CGT) AG 12519-12653 GT AGG (GAG) AG 12822-12960 GT AGG -recovered GlimmerHMM_glimmerT_61332-T1, initial, 11460, 11596 -recovered GlimmerHMM_glimmerT_61332-T1, internal, 11898, 12099 -recovered GlimmerHMM_glimmerT_61332-T1, internal, 12519, 12653 -recovered GlimmerHMM_glimmerT_61332-T1, internal, 12822, 12960 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_120-snap.1-T1 Valid prediction for snap_scaffold_120-snap.3-T1 Valid prediction for GlimmerHMM_glimmerT_61331-T1 Couldn't classify 12976, 13164 Sorry, prediction Augustus_model.g40796.t1 fails validation. (ATG) TC 8670-8730 GT AGG (GCC) AG 9307-9408 GT TGG (ACC) AG 9630-10069 GT AGG (CTT) AG 10711-10845 GT AGG (GCG) AG 11548-11578 GT TGG (ATG) AG 12976-13164 GT TGG -recovered Augustus_model.g40796.t1, initial, 8670, 8730 add_exon() Sorry, Augustus_model.g40796.t1 12976-13164-initial-1 is invalid. -recovered Augustus_model.g40796.t1, initial, 12976, 13164 -recovered Augustus_model.g40796.t1, internal, 9307, 9408 -recovered Augustus_model.g40796.t1, internal, 9630, 10069 -recovered Augustus_model.g40796.t1, internal, 10711, 10845 -recovered Augustus_model.g40796.t1, internal, 11548, 11578 -recovered Augustus_model.g40796.t1, internal, 12976, 13164 Valid prediction for GeneMark_model.106642_t Couldn't classify 1797, 1964 Sorry, prediction snap_scaffold_120-snap.5-T1 fails validation. (GTC) AG 1797-1964 GT GGG (AAG) AG 6833-6879 GA AGG -recovered snap_scaffold_120-snap.5-T1, terminal, 6833, 6879 -recovered snap_scaffold_120-snap.5-T1, internal, 1797, 1964 Couldn't classify 12976, 13164 Sorry, prediction GeneMark_model.106638_t fails validation. (ATG) AG 12317-12349 GT GAG (AAC) AG 12372-12531 GT ATG (ATG) AG 12976-13164 GT TGG -recovered GeneMark_model.106638_t, initial, 12317, 12349 add_exon() Sorry, GeneMark_model.106638_t 12976-13164-initial-1 is invalid. -recovered GeneMark_model.106638_t, initial, 12976, 13164 -recovered GeneMark_model.106638_t, internal, 12317, 12349 -recovered GeneMark_model.106638_t, internal, 12372, 12531 -recovered GeneMark_model.106638_t, internal, 12976, 13164 Valid prediction for GeneMark_model.106640_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1928, rend_intergenic: 1365 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 2520, rend_intergenic: 2031 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 12960, rend_intergenic: 7579 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 14457 -exon list size: 80 building trellis 1.2 2.4 3.7 4.9 6.1 7.3 8.5 9.8 11.0 12.2 13.4 14.6 15.9 17.1 18.3 19.5 20.7 22.0 23.2 24.4 25.6 26.8 28.0 29.3 30.5 31.7 32.9 34.1 35.4 36.6 37.8 39.0 40.2 41.5 42.7 43.9 45.1 46.3 47.6 48.8 50.0 51.2 52.4 53.7 54.9 56.1 57.3 58.5 59.8 61.0 62.2 63.4 64.6 65.9 67.1 68.3 69.5 70.7 72.0 73.2 74.4 75.6 76.8 78.0 79.3 80.5 81.7 82.9 84.1 85.4 86.6 87.8 89.0 90.2 91.5 92.7 93.9 95.1 96.3 97.6 98.8 -found 3 predictions from path traversal Error with prediction: snap lend_intergenic: 1928, rend_intergenic: 1365 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 2520, rend_intergenic: 2031 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 12960, rend_intergenic: 7579 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 3 predictions persist after filtering for low support