-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_7852229-8313329 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.52312_t Valid prediction for snap_scaffold_12-snap.1553-T1 Valid prediction for snap_scaffold_12-snap.1563-T1 Valid prediction for snap_scaffold_12-snap.1522-T1 Valid prediction for GlimmerHMM_glimmerT_30262-T1 Valid prediction for GeneMark_model.52230_t Valid prediction for snap_scaffold_12-snap.1570-T1 Valid prediction for GeneMark_model.52239_t Valid prediction for GlimmerHMM_glimmerT_30255-T1 Valid prediction for GeneMark_model.52260_t Valid prediction for Augustus_model.g20162.t1 Valid prediction for GeneMark_model.52276_t Valid prediction for Augustus_model.g20169.t1 Valid prediction for CodingQuarry_transcript_10283-T1 Valid prediction for snap_scaffold_12-snap.1548-T1 Valid prediction for GlimmerHMM_glimmerT_30264-T1 Valid prediction for snap_scaffold_12-snap.1533-T1 Valid prediction for snap_scaffold_12-snap.1549-T1 Valid prediction for snap_scaffold_12-snap.1505-T1 Valid prediction for snap_scaffold_12-snap.1523-T1 Valid prediction for snap_scaffold_12-snap.1530-T1 Valid prediction for snap_scaffold_12-snap.1560-T1 Valid prediction for GeneMark_model.52295_t Valid prediction for Augustus_model.g20171.t1 Valid prediction for snap_scaffold_12-snap.1562-T1 Valid prediction for GeneMark_model.52294_t Valid prediction for snap_scaffold_12-snap.1524-T1 Valid prediction for GlimmerHMM_glimmerT_30243-T1 Valid prediction for snap_scaffold_12-snap.1489-T1 Valid prediction for GeneMark_model.52282_t Valid prediction for Augustus_model.g20154.t1 Valid prediction for GeneMark_model.52246_t Valid prediction for snap_scaffold_12-snap.1554-T1 Valid prediction for Augustus_model.g20142.t1 Valid prediction for snap_scaffold_12-snap.1485-T1 Valid prediction for snap_scaffold_12-snap.1543-T1 Valid prediction for GlimmerHMM_glimmerT_30246-T1 Valid prediction for GlimmerHMM_glimmerT_30260-T1 Valid prediction for GlimmerHMM_glimmerT_30241-T1 Valid prediction for snap_scaffold_12-snap.1561-T1 Valid prediction for snap_scaffold_12-snap.1481-T1 Valid prediction for Augustus_model.g20157.t1 Valid prediction for snap_scaffold_12-snap.1527-T1 Valid prediction for snap_scaffold_12-snap.1498-T1 Valid prediction for GlimmerHMM_glimmerT_30269-T1 Valid prediction for Augustus_model.g20156.t1 Valid prediction for GeneMark_model.52232_t Valid prediction for snap_scaffold_12-snap.1525-T1 Valid prediction for snap_scaffold_12-snap.1551-T1 Valid prediction for snap_scaffold_12-snap.1564-T1 Valid prediction for snap_scaffold_12-snap.1479-T1 Valid prediction for snap_scaffold_12-snap.1529-T1 Valid prediction for Augustus_model.g20173.t1 Valid prediction for snap_scaffold_12-snap.1544-T1 Valid prediction for GeneMark_model.52226_t Valid prediction for GeneMark_model.52235_t Valid prediction for snap_scaffold_12-snap.1504-T1 Valid prediction for Augustus_model.g20172.t1 Valid prediction for Augustus_model.g20150.t1 Valid prediction for Augustus_model.g20176.t1 Valid prediction for snap_scaffold_12-snap.1502-T1 Valid prediction for GlimmerHMM_glimmerT_30266-T1 Valid prediction for GlimmerHMM_glimmerT_30245-T1 Valid prediction for snap_scaffold_12-snap.1526-T1 Valid prediction for GeneMark_model.52301_t Valid prediction for GeneMark_model.52241_t Valid prediction for Augustus_model.g20144.t1 Valid prediction for snap_scaffold_12-snap.1546-T1 Valid prediction for Augustus_model.g20166.t1 Valid prediction for CodingQuarry_transcript_10282-T1 Valid prediction for snap_scaffold_12-snap.1511-T1 Valid prediction for GeneMark_model.52234_t Valid prediction for Augustus_model.g20168.t1 Valid prediction for Augustus_model.g20145.t1 Valid prediction for Augustus_model.g20170.t1 Valid prediction for GeneMark_model.52296_t Valid prediction for snap_scaffold_12-snap.1557-T1 Valid prediction for GlimmerHMM_glimmerT_30267-T1 Valid prediction for GeneMark_model.52236_t Valid prediction for GeneMark_model.52303_t Valid prediction for HiQ_model.g20146.t1 Valid prediction for Augustus_model.g20158.t1 Valid prediction for GlimmerHMM_glimmerT_30237-T1 Valid prediction for GlimmerHMM_glimmerT_30268-T1 Valid prediction for pasa_asmbl_8762.p1 Valid prediction for pasa_asmbl_8776.p1 Valid prediction for snap_scaffold_12-snap.1539-T1 Valid prediction for Augustus_model.g20167.t1 Valid prediction for GeneMark_model.52275_t Valid prediction for GeneMark_model.52257_t Valid prediction for snap_scaffold_12-snap.1545-T1 Valid prediction for snap_scaffold_12-snap.1531-T1 Valid prediction for GeneMark_model.52273_t Valid prediction for GlimmerHMM_glimmerT_30277-T1 Valid prediction for snap_scaffold_12-snap.1476-T1 Valid prediction for snap_scaffold_12-snap.1567-T1 Valid prediction for GeneMark_model.52290_t Valid prediction for snap_scaffold_12-snap.1512-T1 Valid prediction for GlimmerHMM_glimmerT_30270-T1 Valid prediction for Augustus_model.g20153.t1 Valid prediction for snap_scaffold_12-snap.1507-T1 Valid prediction for snap_scaffold_12-snap.1538-T1 Valid prediction for GlimmerHMM_glimmerT_30259-T1 Valid prediction for GlimmerHMM_glimmerT_30254-T1 Valid prediction for GeneMark_model.52288_t Valid prediction for GlimmerHMM_glimmerT_30275-T1 Valid prediction for snap_scaffold_12-snap.1565-T1 Valid prediction for GeneMark_model.52243_t Valid prediction for GlimmerHMM_glimmerT_30247-T1 Valid prediction for Augustus_model.g20151.t1 Valid prediction for Augustus_model.g20159.t1 Valid prediction for snap_scaffold_12-snap.1513-T1 Valid prediction for GlimmerHMM_glimmerT_30257-T1 Valid prediction for GeneMark_model.52291_t Valid prediction for snap_scaffold_12-snap.1497-T1 Valid prediction for GeneMark_model.52305_t Valid prediction for GeneMark_model.52253_t Valid prediction for snap_scaffold_12-snap.1547-T1 Valid prediction for GeneMark_model.52311_t Valid prediction for snap_scaffold_12-snap.1552-T1 Valid prediction for GlimmerHMM_glimmerT_30256-T1 Valid prediction for Augustus_model.g20163.t1 Valid prediction for GlimmerHMM_glimmerT_30253-T1 Valid prediction for snap_scaffold_12-snap.1536-T1 Valid prediction for GlimmerHMM_glimmerT_30263-T1 Valid prediction for snap_scaffold_12-snap.1555-T1 Valid prediction for GlimmerHMM_glimmerT_30261-T1 Valid prediction for snap_scaffold_12-snap.1509-T1 Valid prediction for GeneMark_model.52281_t Valid prediction for GlimmerHMM_glimmerT_30249-T1 Valid prediction for GeneMark_model.52266_t Valid prediction for snap_scaffold_12-snap.1493-T1 Valid prediction for snap_scaffold_12-snap.1542-T1 Valid prediction for GeneMark_model.52289_t Valid prediction for snap_scaffold_12-snap.1501-T1 Valid prediction for GeneMark_model.52228_t Valid prediction for snap_scaffold_12-snap.1491-T1 Valid prediction for GeneMark_model.52256_t Valid prediction for Augustus_model.g20177.t1 Valid prediction for GeneMark_model.52279_t Valid prediction for GlimmerHMM_glimmerT_30238-T1 Valid prediction for GlimmerHMM_glimmerT_30271-T1 Valid prediction for GlimmerHMM_glimmerT_30265-T1 Valid prediction for GeneMark_model.52285_t Valid prediction for GeneMark_model.52250_t Valid prediction for snap_scaffold_12-snap.1492-T1 Valid prediction for Augustus_model.g20174.t1 Valid prediction for Augustus_model.g20178.t1 Valid prediction for GlimmerHMM_glimmerT_30258-T1 Valid prediction for snap_scaffold_12-snap.1559-T1 Couldn't classify 113517, 113609 Sorry, prediction pasa_asmbl_8769.p1 fails validation. (CGA) GC 113517-113609 GT TGG (TGC) AG 115589-115693 GT AGG (ACC) AG 117519-117587 GT AGG (CTG) AG 117756-117975 GT GGG (CCC) AG 118149-118335 GT TGG (GGA) AG 118486-118576 GT AGG (ACC) AG 118844-118981 GT AGG (ATC) AG 119506-119624 GT AGG (GGT) AG 120560-120809 GT AGG (GTG) AG 120992-121110 GT CGG (GTT) AG 121212-121322 GT GGG (GAA) AG 121447-121525 GT TGG (GAG) AG 121712-121873 CA AGC -recovered pasa_asmbl_8769.p1, terminal, 121712, 121873 -recovered pasa_asmbl_8769.p1, internal, 115589, 115693 -recovered pasa_asmbl_8769.p1, internal, 117519, 117587 -recovered pasa_asmbl_8769.p1, internal, 117756, 117975 -recovered pasa_asmbl_8769.p1, internal, 118149, 118335 -recovered pasa_asmbl_8769.p1, internal, 118486, 118576 -recovered pasa_asmbl_8769.p1, internal, 118844, 118981 -recovered pasa_asmbl_8769.p1, internal, 119506, 119624 -recovered pasa_asmbl_8769.p1, internal, 120560, 120809 -recovered pasa_asmbl_8769.p1, internal, 120992, 121110 -recovered pasa_asmbl_8769.p1, internal, 121212, 121322 -recovered pasa_asmbl_8769.p1, internal, 121447, 121525 Valid prediction for HiQ_model.g20147.t1 Valid prediction for GlimmerHMM_glimmerT_30273-T1 Valid prediction for snap_scaffold_12-snap.1572-T1 Valid prediction for GlimmerHMM_glimmerT_30278-T1 Valid prediction for snap_scaffold_12-snap.1528-T1 Couldn't classify 110837, 111050 Sorry, prediction pasa_asmbl_8765.p1 fails validation. (CGC) CC 110837-111050 GT CGG (ATG) AG 111172-111236 GT AGG (ACG) AG 111338-111485 GT GGG (GGA) AG 111792-111874 GT AGG add_exon() Sorry, pasa_asmbl_8765.p1 111172-111236-initial-1 is invalid. -recovered pasa_asmbl_8765.p1, initial, 111172, 111236 -recovered pasa_asmbl_8765.p1, terminal, 111792, 111874 -recovered pasa_asmbl_8765.p1, internal, 111172, 111236 -recovered pasa_asmbl_8765.p1, internal, 111338, 111485 -recovered pasa_asmbl_8765.p1, internal, 111792, 111874 Valid prediction for GeneMark_model.52238_t Couldn't classify 345449, 346132 Sorry, prediction pasa_asmbl_8779.p1 fails validation. (CTG) CT 345449-346132 CC AAC Valid prediction for GlimmerHMM_glimmerT_30240-T1 Valid prediction for snap_scaffold_12-snap.1558-T1 Valid prediction for snap_scaffold_12-snap.1566-T1 Valid prediction for GeneMark_model.52262_t Valid prediction for snap_scaffold_12-snap.1540-T1 Valid prediction for GeneMark_model.52248_t Valid prediction for GeneMark_model.52310_t Valid prediction for snap_scaffold_12-snap.1496-T1 Valid prediction for snap_scaffold_12-snap.1516-T1 Valid prediction for Augustus_model.g20164.t1 Valid prediction for snap_scaffold_12-snap.1556-T1 Valid prediction for GeneMark_model.52270_t Valid prediction for Augustus_model.g20161.t1 Valid prediction for GlimmerHMM_glimmerT_30242-T1 Valid prediction for snap_scaffold_12-snap.1510-T1 Valid prediction for GeneMark_model.52224_t Valid prediction for GlimmerHMM_glimmerT_30276-T1 Valid prediction for snap_scaffold_12-snap.1517-T1 Valid prediction for Augustus_model.g20155.t1 Valid prediction for GlimmerHMM_glimmerT_30272-T1 Couldn't classify 121447, 121523 Couldn't classify 121707, 121873 Sorry, prediction CodingQuarry_transcript_10284-T1 fails validation. (ATG) TG 120648-120809 GT AGG (GTG) AG 120992-121110 GT CGG (GTT) AG 121212-121322 GT GGG (GAA) AG 121447-121523 TG GGT (TGC) GT 121707-121873 CA AGC -recovered CodingQuarry_transcript_10284-T1, initial, 120648, 120809 -recovered CodingQuarry_transcript_10284-T1, internal, 120992, 121110 -recovered CodingQuarry_transcript_10284-T1, internal, 121212, 121322 Valid prediction for snap_scaffold_12-snap.1518-T1 Valid prediction for snap_scaffold_12-snap.1521-T1 Valid prediction for GeneMark_model.52264_t Valid prediction for GeneMark_model.52299_t Valid prediction for snap_scaffold_12-snap.1571-T1 Valid prediction for GlimmerHMM_glimmerT_30274-T1 Valid prediction for GeneMark_model.52292_t Valid prediction for snap_scaffold_12-snap.1508-T1 Valid prediction for snap_scaffold_12-snap.1506-T1 Valid prediction for GeneMark_model.52302_t Valid prediction for snap_scaffold_12-snap.1514-T1 Valid prediction for GlimmerHMM_glimmerT_30279-T1 Valid prediction for GeneMark_model.52307_t Valid prediction for GeneMark_model.52287_t Valid prediction for Augustus_model.g20179.t1 Valid prediction for snap_scaffold_12-snap.1569-T1 Valid prediction for snap_scaffold_12-snap.1535-T1 Couldn't classify 326440, 326748 Sorry, prediction pasa_asmbl_8777.p1 fails validation. (GAT) TA 326440-326748 AG AGA Valid prediction for snap_scaffold_12-snap.1515-T1 Valid prediction for snap_scaffold_12-snap.1541-T1 Valid prediction for snap_scaffold_12-snap.1550-T1 Valid prediction for GeneMark_model.52283_t Valid prediction for snap_scaffold_12-snap.1503-T1 Valid prediction for Augustus_model.g20152.t1 Valid prediction for Augustus_model.g20175.t1 Valid prediction for GeneMark_model.52297_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.52277_t Valid prediction for GeneMark_model.52237_t Valid prediction for snap_scaffold_12-snap.1480-T1 Valid prediction for snap_scaffold_12-snap.1520-T1 Valid prediction for GeneMark_model.52267_t Valid prediction for Augustus_model.g20148.t1 Valid prediction for snap_scaffold_12-snap.1484-T1 Valid prediction for GeneMark_model.52222_t Valid prediction for GeneMark_model.52306_t Valid prediction for GeneMark_model.52304_t Valid prediction for snap_scaffold_12-snap.1495-T1 Valid prediction for GeneMark_model.52231_t Valid prediction for GeneMark_model.52252_t Valid prediction for snap_scaffold_12-snap.1537-T1 Valid prediction for GlimmerHMM_glimmerT_30236-T1 Valid prediction for GeneMark_model.52258_t Valid prediction for GeneMark_model.52298_t Valid prediction for GlimmerHMM_glimmerT_30244-T1 Valid prediction for GlimmerHMM_glimmerT_30250-T1 Valid prediction for snap_scaffold_12-snap.1487-T1 Valid prediction for snap_scaffold_12-snap.1568-T1 Valid prediction for Augustus_model.g20160.t1 Valid prediction for GlimmerHMM_glimmerT_30248-T1 Valid prediction for GeneMark_model.52259_t Valid prediction for Augustus_model.g20149.t1 Valid prediction for GeneMark_model.52280_t Valid prediction for GeneMark_model.52272_t Valid prediction for snap_scaffold_12-snap.1477-T1 Valid prediction for GeneMark_model.52225_t Valid prediction for GlimmerHMM_glimmerT_30251-T1 Valid prediction for GlimmerHMM_glimmerT_30239-T1 Valid prediction for GlimmerHMM_glimmerT_30252-T1 Valid prediction for GeneMark_model.52309_t Valid prediction for snap_scaffold_12-snap.1483-T1 Valid prediction for GeneMark_model.52300_t Valid prediction for GeneMark_model.52293_t Valid prediction for GeneMark_model.52255_t Valid prediction for snap_scaffold_12-snap.1490-T1 Valid prediction for GeneMark_model.52223_t Valid prediction for snap_scaffold_12-snap.1488-T1 Valid prediction for GlimmerHMM_glimmerT_30235-T1 Valid prediction for snap_scaffold_12-snap.1519-T1 Valid prediction for GeneMark_model.52229_t Valid prediction for GeneMark_model.52245_t Valid prediction for GeneMark_model.52247_t Valid prediction for GeneMark_model.52269_t Valid prediction for GeneMark_model.52254_t Valid prediction for GeneMark_model.52268_t Valid prediction for GeneMark_model.52274_t Valid prediction for GeneMark_model.52249_t Valid prediction for Augustus_model.g20143.t1 Valid prediction for snap_scaffold_12-snap.1494-T1 Valid prediction for GeneMark_model.52261_t Valid prediction for snap_scaffold_12-snap.1478-T1 Valid prediction for snap_scaffold_12-snap.1534-T1 Valid prediction for snap_scaffold_12-snap.1499-T1 Valid prediction for GeneMark_model.52227_t Valid prediction for snap_scaffold_12-snap.1532-T1 Valid prediction for GeneMark_model.52251_t Valid prediction for snap_scaffold_12-snap.1486-T1 Valid prediction for GeneMark_model.52244_t Valid prediction for Augustus_model.g20165.t1 Valid prediction for GeneMark_model.52265_t Valid prediction for GeneMark_model.52233_t Valid prediction for GeneMark_model.52278_t Valid prediction for GeneMark_model.52263_t Valid prediction for snap_scaffold_12-snap.1500-T1 Valid prediction for GeneMark_model.52242_t Valid prediction for GeneMark_model.52271_t Valid prediction for snap_scaffold_12-snap.1482-T1 Valid prediction for GeneMark_model.52240_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16116, rend_intergenic: 5369 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 21339, rend_intergenic: 16182 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28075, rend_intergenic: 21980 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 60679, rend_intergenic: 32258 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63250, rend_intergenic: 62681 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88229, rend_intergenic: 65732 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103371, rend_intergenic: 88910 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 124895, rend_intergenic: 114933 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134849, rend_intergenic: 127319 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 158358, rend_intergenic: 141365 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 256596, rend_intergenic: 255311 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 303985, rend_intergenic: 299365 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 324002, rend_intergenic: 313339 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 326748, rend_intergenic: 324910 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 444384, rend_intergenic: 439151 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 461101 -exon list size: 1234 building trellis 0.1 0.2 0.2 0.3 0.4 0.5 0.6 0.6 0.7 0.8 0.9 1.0 1.1 1.1 1.2 1.3 1.4 1.5 1.5 1.6 1.7 1.8 1.9 1.9 2.0 2.1 2.2 2.3 2.3 2.4 2.5 2.6 2.7 2.8 2.8 2.9 3.0 3.1 3.2 3.2 3.3 3.4 3.5 3.6 3.6 3.7 3.8 3.9 4.0 4.0 4.1 4.2 4.3 4.4 4.4 4.5 4.6 4.7 4.8 4.9 4.9 5.0 5.1 5.2 5.3 5.3 5.4 5.5 5.6 5.7 5.7 5.8 5.9 6.0 6.1 6.1 6.2 6.3 6.4 6.5 6.6 6.6 6.7 6.8 6.9 7.0 7.0 7.1 7.2 7.3 7.4 7.4 7.5 7.6 7.7 7.8 7.8 7.9 8.0 8.1 8.2 8.3 8.3 8.4 8.5 8.6 8.7 8.7 8.8 8.9 9.0 9.1 9.1 9.2 9.3 9.4 9.5 9.5 9.6 9.7 9.8 9.9 10.0 10.0 10.1 10.2 10.3 10.4 10.4 10.5 10.6 10.7 10.8 10.8 10.9 11.0 11.1 11.2 11.2 11.3 11.4 11.5 11.6 11.7 11.7 11.8 11.9 12.0 12.1 12.1 12.2 12.3 12.4 12.5 12.5 12.6 12.7 12.8 12.9 12.9 13.0 13.1 13.2 13.3 13.3 13.4 13.5 13.6 13.7 13.8 13.8 13.9 14.0 14.1 14.2 14.2 14.3 14.4 14.5 14.6 14.6 14.7 14.8 14.9 15.0 15.0 15.1 15.2 15.3 15.4 15.5 15.5 15.6 15.7 15.8 15.9 15.9 16.0 16.1 16.2 16.3 16.3 16.4 16.5 16.6 16.7 16.7 16.8 16.9 17.0 17.1 17.2 17.2 17.3 17.4 17.5 17.6 17.6 17.7 17.8 17.9 18.0 18.0 18.1 18.2 18.3 18.4 18.4 18.5 18.6 18.7 18.8 18.9 18.9 19.0 19.1 19.2 19.3 19.3 19.4 19.5 19.6 19.7 19.7 19.8 19.9 20.0 20.1 20.1 20.2 20.3 20.4 20.5 20.6 20.6 20.7 20.8 20.9 21.0 21.0 21.1 21.2 21.3 21.4 21.4 21.5 21.6 21.7 21.8 21.8 21.9 22.0 22.1 22.2 22.2 22.3 22.4 22.5 22.6 22.7 22.7 22.8 22.9 23.0 23.1 23.1 23.2 23.3 23.4 23.5 23.5 23.6 23.7 23.8 23.9 23.9 24.0 24.1 24.2 24.3 24.4 24.4 24.5 24.6 24.7 24.8 24.8 24.9 25.0 25.1 25.2 25.2 25.3 25.4 25.5 25.6 25.6 25.7 25.8 25.9 26.0 26.1 26.1 26.2 26.3 26.4 26.5 26.5 26.6 26.7 26.8 26.9 26.9 27.0 27.1 27.2 27.3 27.3 27.4 27.5 27.6 27.7 27.8 27.8 27.9 28.0 28.1 28.2 28.2 28.3 28.4 28.5 28.6 28.6 28.7 28.8 28.9 29.0 29.0 29.1 29.2 29.3 29.4 29.4 29.5 29.6 29.7 29.8 29.9 29.9 30.0 30.1 30.2 30.3 30.3 30.4 30.5 30.6 30.7 30.7 30.8 30.9 31.0 31.1 31.1 31.2 31.3 31.4 31.5 31.6 31.6 31.7 31.8 31.9 32.0 32.0 32.1 32.2 32.3 32.4 32.4 32.5 32.6 32.7 32.8 32.8 32.9 33.0 33.1 33.2 33.3 33.3 33.4 33.5 33.6 33.7 33.7 33.8 33.9 34.0 34.1 34.1 34.2 34.3 34.4 34.5 34.5 34.6 34.7 34.8 34.9 35.0 35.0 35.1 35.2 35.3 35.4 35.4 35.5 35.6 35.7 35.8 35.8 35.9 36.0 36.1 36.2 36.2 36.3 36.4 36.5 36.6 36.7 36.7 36.8 36.9 37.0 37.1 37.1 37.2 37.3 37.4 37.5 37.5 37.6 37.7 37.8 37.9 37.9 38.0 38.1 38.2 38.3 38.3 38.4 38.5 38.6 38.7 38.8 38.8 38.9 39.0 39.1 39.2 39.2 39.3 39.4 39.5 39.6 39.6 39.7 39.8 39.9 40.0 40.0 40.1 40.2 40.3 40.4 40.5 40.5 40.6 40.7 40.8 40.9 40.9 41.0 41.1 41.2 41.3 41.3 41.4 41.5 41.6 41.7 41.7 41.8 41.9 42.0 42.1 42.2 42.2 42.3 42.4 42.5 42.6 42.6 42.7 42.8 42.9 43.0 43.0 43.1 43.2 43.3 43.4 43.4 43.5 43.6 43.7 43.8 43.9 43.9 44.0 44.1 44.2 44.3 44.3 44.4 44.5 44.6 44.7 44.7 44.8 44.9 45.0 45.1 45.1 45.2 45.3 45.4 45.5 45.6 45.6 45.7 45.8 45.9 46.0 46.0 46.1 46.2 46.3 46.4 46.4 46.5 46.6 46.7 46.8 46.8 46.9 47.0 47.1 47.2 47.2 47.3 47.4 47.5 47.6 47.7 47.7 47.8 47.9 48.0 48.1 48.1 48.2 48.3 48.4 48.5 48.5 48.6 48.7 48.8 48.9 48.9 49.0 49.1 49.2 49.3 49.4 49.4 49.5 49.6 49.7 49.8 49.8 49.9 50.0 50.1 50.2 50.2 50.3 50.4 50.5 50.6 50.6 50.7 50.8 50.9 51.0 51.1 51.1 51.2 51.3 51.4 51.5 51.5 51.6 51.7 51.8 51.9 51.9 52.0 52.1 52.2 52.3 52.3 52.4 52.5 52.6 52.7 52.8 52.8 52.9 53.0 53.1 53.2 53.2 53.3 53.4 53.5 53.6 53.6 53.7 53.8 53.9 54.0 54.0 54.1 54.2 54.3 54.4 54.4 54.5 54.6 54.7 54.8 54.9 54.9 55.0 55.1 55.2 55.3 55.3 55.4 55.5 55.6 55.7 55.7 55.8 55.9 56.0 56.1 56.1 56.2 56.3 56.4 56.5 56.6 56.6 56.7 56.8 56.9 57.0 57.0 57.1 57.2 57.3 57.4 57.4 57.5 57.6 57.7 57.8 57.8 57.9 58.0 58.1 58.2 58.3 58.3 58.4 58.5 58.6 58.7 58.7 58.8 58.9 59.0 59.1 59.1 59.2 59.3 59.4 59.5 59.5 59.6 59.7 59.8 59.9 60.0 60.0 60.1 60.2 60.3 60.4 60.4 60.5 60.6 60.7 60.8 60.8 60.9 61.0 61.1 61.2 61.2 61.3 61.4 61.5 61.6 61.7 61.7 61.8 61.9 62.0 62.1 62.1 62.2 62.3 62.4 62.5 62.5 62.6 62.7 62.8 62.9 62.9 63.0 63.1 63.2 63.3 63.3 63.4 63.5 63.6 63.7 63.8 63.8 63.9 64.0 64.1 64.2 64.2 64.3 64.4 64.5 64.6 64.6 64.7 64.8 64.9 65.0 65.0 65.1 65.2 65.3 65.4 65.5 65.5 65.6 65.7 65.8 65.9 65.9 66.0 66.1 66.2 66.3 66.3 66.4 66.5 66.6 66.7 66.7 66.8 66.9 67.0 67.1 67.2 67.2 67.3 67.4 67.5 67.6 67.6 67.7 67.8 67.9 68.0 68.0 68.1 68.2 68.3 68.4 68.4 68.5 68.6 68.7 68.8 68.9 68.9 69.0 69.1 69.2 69.3 69.3 69.4 69.5 69.6 69.7 69.7 69.8 69.9 70.0 70.1 70.1 70.2 70.3 70.4 70.5 70.6 70.6 70.7 70.8 70.9 71.0 71.0 71.1 71.2 71.3 71.4 71.4 71.5 71.6 71.7 71.8 71.8 71.9 72.0 72.1 72.2 72.2 72.3 72.4 72.5 72.6 72.7 72.7 72.8 72.9 73.0 73.1 73.1 73.2 73.3 73.4 73.5 73.5 73.6 73.7 73.8 73.9 73.9 74.0 74.1 74.2 74.3 74.4 74.4 74.5 74.6 74.7 74.8 74.8 74.9 75.0 75.1 75.2 75.2 75.3 75.4 75.5 75.6 75.6 75.7 75.8 75.9 76.0 76.1 76.1 76.2 76.3 76.4 76.5 76.5 76.6 76.7 76.8 76.9 76.9 77.0 77.1 77.2 77.3 77.3 77.4 77.5 77.6 77.7 77.8 77.8 77.9 78.0 78.1 78.2 78.2 78.3 78.4 78.5 78.6 78.6 78.7 78.8 78.9 79.0 79.0 79.1 79.2 79.3 79.4 79.4 79.5 79.6 79.7 79.8 79.9 79.9 80.0 80.1 80.2 80.3 80.3 80.4 80.5 80.6 80.7 80.7 80.8 80.9 81.0 81.1 81.1 81.2 81.3 81.4 81.5 81.6 81.6 81.7 81.8 81.9 82.0 82.0 82.1 82.2 82.3 82.4 82.4 82.5 82.6 82.7 82.8 82.8 82.9 83.0 83.1 83.2 83.3 83.3 83.4 83.5 83.6 83.7 83.7 83.8 83.9 84.0 84.1 84.1 84.2 84.3 84.4 84.5 84.5 84.6 84.7 84.8 84.9 85.0 85.0 85.1 85.2 85.3 85.4 85.4 85.5 85.6 85.7 85.8 85.8 85.9 86.0 86.1 86.2 86.2 86.3 86.4 86.5 86.6 86.7 86.7 86.8 86.9 87.0 87.1 87.1 87.2 87.3 87.4 87.5 87.5 87.6 87.7 87.8 87.9 87.9 88.0 88.1 88.2 88.3 88.3 88.4 88.5 88.6 88.7 88.8 88.8 88.9 89.0 89.1 89.2 89.2 89.3 89.4 89.5 89.6 89.6 89.7 89.8 89.9 90.0 90.0 90.1 90.2 90.3 90.4 90.5 90.5 90.6 90.7 90.8 90.9 90.9 91.0 91.1 91.2 91.3 91.3 91.4 91.5 91.6 91.7 91.7 91.8 91.9 92.0 92.1 92.2 92.2 92.3 92.4 92.5 92.6 92.6 92.7 92.8 92.9 93.0 93.0 93.1 93.2 93.3 93.4 93.4 93.5 93.6 93.7 93.8 93.9 93.9 94.0 94.1 94.2 94.3 94.3 94.4 94.5 94.6 94.7 94.7 94.8 94.9 95.0 95.1 95.1 95.2 95.3 95.4 95.5 95.6 95.6 95.7 95.8 95.9 96.0 96.0 96.1 96.2 96.3 96.4 96.4 96.5 96.6 96.7 96.8 96.8 96.9 97.0 97.1 97.2 97.2 97.3 97.4 97.5 97.6 97.7 97.7 97.8 97.9 98.0 98.1 98.1 98.2 98.3 98.4 98.5 98.5 98.6 98.7 98.8 98.9 98.9 99.0 99.1 99.2 99.3 99.4 99.4 99.5 99.6 99.7 99.8 99.8 99.9 -found 85 predictions from path traversal Error with prediction: snap lend_intergenic: 16116, rend_intergenic: 5369 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 21339, rend_intergenic: 16182 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 28075, rend_intergenic: 21980 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 60679, rend_intergenic: 32258 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63250, rend_intergenic: 62681 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88229, rend_intergenic: 65732 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103371, rend_intergenic: 88910 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 124895, rend_intergenic: 114933 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 134849, rend_intergenic: 127319 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 158358, rend_intergenic: 141365 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 256596, rend_intergenic: 255311 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 303985, rend_intergenic: 299365 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 324002, rend_intergenic: 313339 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 326748, rend_intergenic: 324910 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 444384, rend_intergenic: 439151 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 59 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 34244 -exon list size: 128 building trellis 0.8 1.5 2.3 3.1 3.8 4.6 5.4 6.2 6.9 7.7 8.5 9.2 10.0 10.8 11.5 12.3 13.1 13.8 14.6 15.4 16.2 16.9 17.7 18.5 19.2 20.0 20.8 21.5 22.3 23.1 23.8 24.6 25.4 26.2 26.9 27.7 28.5 29.2 30.0 30.8 31.5 32.3 33.1 33.8 34.6 35.4 36.2 36.9 37.7 38.5 39.2 40.0 40.8 41.5 42.3 43.1 43.8 44.6 45.4 46.2 46.9 47.7 48.5 49.2 50.0 50.8 51.5 52.3 53.1 53.8 54.6 55.4 56.2 56.9 57.7 58.5 59.2 60.0 60.8 61.5 62.3 63.1 63.8 64.6 65.4 66.2 66.9 67.7 68.5 69.2 70.0 70.8 71.5 72.3 73.1 73.8 74.6 75.4 76.2 76.9 77.7 78.5 79.2 80.0 80.8 81.5 82.3 83.1 83.8 84.6 85.4 86.2 86.9 87.7 88.5 89.2 90.0 90.8 91.5 92.3 93.1 93.8 94.6 95.4 96.2 96.9 97.7 98.5 99.2 -found 5 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support