-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_6739023-7025647

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.52001_t
Valid prediction for GlimmerHMM_glimmerT_30101-T1
Valid prediction for snap_scaffold_12-snap.1272-T1
Valid prediction for GlimmerHMM_glimmerT_30104-T1
Valid prediction for snap_scaffold_12-snap.1273-T1
Valid prediction for GlimmerHMM_glimmerT_30094-T1
Valid prediction for GeneMark_model.52007_t
Valid prediction for GlimmerHMM_glimmerT_30092-T1
Valid prediction for GeneMark_model.51999_t
Valid prediction for GlimmerHMM_glimmerT_30105-T1
Valid prediction for GlimmerHMM_glimmerT_30090-T1
Valid prediction for GeneMark_model.51995_t
Valid prediction for snap_scaffold_12-snap.1282-T1
Valid prediction for GlimmerHMM_glimmerT_30088-T1
Valid prediction for GlimmerHMM_glimmerT_30091-T1
Valid prediction for GlimmerHMM_glimmerT_30102-T1
Valid prediction for GeneMark_model.52002_t
Valid prediction for GeneMark_model.52004_t
Valid prediction for GeneMark_model.51994_t
Valid prediction for GlimmerHMM_glimmerT_30100-T1
Valid prediction for snap_scaffold_12-snap.1278-T1
Valid prediction for snap_scaffold_12-snap.1271-T1
Valid prediction for snap_scaffold_12-snap.1274-T1
Valid prediction for snap_scaffold_12-snap.1280-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g20027.t1
Valid prediction for pasa_asmbl_7681.p1
Valid prediction for GlimmerHMM_glimmerT_30095-T1
Valid prediction for GlimmerHMM_glimmerT_30106-T1
Valid prediction for GlimmerHMM_glimmerT_30103-T1
Valid prediction for CodingQuarry_transcript_10233-T1
Valid prediction for GeneMark_model.52009_t
Valid prediction for snap_scaffold_12-snap.1279-T1
Valid prediction for snap_scaffold_12-snap.1268-T1
Valid prediction for GeneMark_model.52005_t
Valid prediction for GlimmerHMM_glimmerT_30086-T1
Valid prediction for GeneMark_model.52010_t
Valid prediction for snap_scaffold_12-snap.1281-T1
Valid prediction for pasa_asmbl_7682.p1
Valid prediction for GeneMark_model.51997_t
Valid prediction for snap_scaffold_12-snap.1269-T1
Valid prediction for Augustus_model.g20032.t1
Valid prediction for GeneMark_model.51992_t
Valid prediction for snap_scaffold_12-snap.1277-T1
Valid prediction for pasa_asmbl_8285.p1
Valid prediction for GeneMark_model.52008_t
Valid prediction for GeneMark_model.51989_t
Valid prediction for Augustus_model.g20031.t1
Valid prediction for HiQ_model.g20030.t1
Valid prediction for GeneMark_model.52006_t
Valid prediction for GeneMark_model.51993_t
Valid prediction for GeneMark_model.51996_t
Valid prediction for GlimmerHMM_glimmerT_30096-T1
Valid prediction for HiQ_model.g20029.t1
Valid prediction for GlimmerHMM_glimmerT_30099-T1
Valid prediction for GlimmerHMM_glimmerT_30097-T1
Valid prediction for snap_scaffold_12-snap.1275-T1
Valid prediction for snap_scaffold_12-snap.1270-T1
Valid prediction for GeneMark_model.51998_t
Valid prediction for snap_scaffold_12-snap.1276-T1
Valid prediction for GlimmerHMM_glimmerT_30098-T1
Valid prediction for Augustus_model.g20025.t1
Valid prediction for GlimmerHMM_glimmerT_30089-T1
Valid prediction for GeneMark_model.51991_t
Valid prediction for Augustus_model.g20028.t1
Valid prediction for GeneMark_model.52000_t
Valid prediction for snap_scaffold_12-snap.1267-T1
Valid prediction for CodingQuarry_transcript_10234-T1
Valid prediction for GlimmerHMM_glimmerT_30087-T1
Valid prediction for Augustus_model.g20026.t1
Valid prediction for CodingQuarry_transcript_10231-T1
Valid prediction for snap_scaffold_12-snap.1283-T1
Valid prediction for GlimmerHMM_glimmerT_30093-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 286625
-exon list size: 236


building trellis

0.4    
0.8    
1.3    
1.7    
2.1    
2.5    
2.9    
3.4    
3.8    
4.2    
4.6    
5.0    
5.5    
5.9    
6.3    
6.7    
7.1    
7.6    
8.0    
8.4    
8.8    
9.2    
9.7    
10.1    
10.5    
10.9    
11.3    
11.8    
12.2    
12.6    
13.0    
13.4    
13.9    
14.3    
14.7    
15.1    
15.5    
16.0    
16.4    
16.8    
17.2    
17.6    
18.1    
18.5    
18.9    
19.3    
19.7    
20.2    
20.6    
21.0    
21.4    
21.8    
22.3    
22.7    
23.1    
23.5    
23.9    
24.4    
24.8    
25.2    
25.6    
26.1    
26.5    
26.9    
27.3    
27.7    
28.2    
28.6    
29.0    
29.4    
29.8    
30.3    
30.7    
31.1    
31.5    
31.9    
32.4    
32.8    
33.2    
33.6    
34.0    
34.5    
34.9    
35.3    
35.7    
36.1    
36.6    
37.0    
37.4    
37.8    
38.2    
38.7    
39.1    
39.5    
39.9    
40.3    
40.8    
41.2    
41.6    
42.0    
42.4    
42.9    
43.3    
43.7    
44.1    
44.5    
45.0    
45.4    
45.8    
46.2    
46.6    
47.1    
47.5    
47.9    
48.3    
48.7    
49.2    
49.6    
50.0    
50.4    
50.8    
51.3    
51.7    
52.1    
52.5    
52.9    
53.4    
53.8    
54.2    
54.6    
55.0    
55.5    
55.9    
56.3    
56.7    
57.1    
57.6    
58.0    
58.4    
58.8    
59.2    
59.7    
60.1    
60.5    
60.9    
61.3    
61.8    
62.2    
62.6    
63.0    
63.4    
63.9    
64.3    
64.7    
65.1    
65.5    
66.0    
66.4    
66.8    
67.2    
67.6    
68.1    
68.5    
68.9    
69.3    
69.7    
70.2    
70.6    
71.0    
71.4    
71.8    
72.3    
72.7    
73.1    
73.5    
73.9    
74.4    
74.8    
75.2    
75.6    
76.1    
76.5    
76.9    
77.3    
77.7    
78.2    
78.6    
79.0    
79.4    
79.8    
80.3    
80.7    
81.1    
81.5    
81.9    
82.4    
82.8    
83.2    
83.6    
84.0    
84.5    
84.9    
85.3    
85.7    
86.1    
86.6    
87.0    
87.4    
87.8    
88.2    
88.7    
89.1    
89.5    
89.9    
90.3    
90.8    
91.2    
91.6    
92.0    
92.4    
92.9    
93.3    
93.7    
94.1    
94.5    
95.0    
95.4    
95.8    
96.2    
96.6    
97.1    
97.5    
97.9    
98.3    
98.7    
99.2    
99.6    
-found 15 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support