-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_6355623-6741915

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_12-snap.1259-T1
Valid prediction for snap_scaffold_12-snap.1239-T1
Valid prediction for snap_scaffold_12-snap.1251-T1
Valid prediction for GeneMark_model.51980_t
Valid prediction for snap_scaffold_12-snap.1246-T1
Valid prediction for snap_scaffold_12-snap.1257-T1
Valid prediction for snap_scaffold_12-snap.1255-T1
Valid prediction for HiQ_model.g20005.t1
Valid prediction for GeneMark_model.51981_t
Valid prediction for GlimmerHMM_glimmerT_30080-T1
Couldn't classify 29110, 29268
Couldn't classify 29735, 29880
Sorry, prediction pasa_asmbl_8633.p1 fails validation.
(TTG)	 AG	29110-29268	GT	CCG
(AGG)	 AG	29417-29504	GT	AGG
(ACG)	 AG	29735-29880	GG	ACG
-recovered pasa_asmbl_8633.p1, internal, 29110, 29268
-recovered pasa_asmbl_8633.p1, internal, 29417, 29504
Valid prediction for CodingQuarry_transcript_10220-T1
Valid prediction for snap_scaffold_12-snap.1252-T1
Valid prediction for CodingQuarry_transcript_10211-T1
Valid prediction for snap_scaffold_12-snap.1240-T1
Valid prediction for GeneMark_model.51976_t
Couldn't classify 29998, 31960
Sorry, prediction pasa_asmbl_8635.p1 fails validation.
(CCT)	 CT	29998-31960	GT	GGG
(AAC)	 AG	32251-32360	GT	AGG
(GAC)	 AG	32639-32723	GT	AGG
(CGA)	 AG	33375-33679	GG	GAG
-recovered pasa_asmbl_8635.p1, terminal, 33375, 33679
-recovered pasa_asmbl_8635.p1, internal, 32251, 32360
-recovered pasa_asmbl_8635.p1, internal, 32639, 32723
Valid prediction for CodingQuarry_transcript_10219-T1
Valid prediction for snap_scaffold_12-snap.1249-T1
Valid prediction for pasa_asmbl_8659.p1
Valid prediction for Augustus_model.g20014.t1
Valid prediction for GlimmerHMM_glimmerT_30061-T1
Valid prediction for snap_scaffold_12-snap.1254-T1
Valid prediction for pasa_asmbl_8637.p1
Couldn't classify 175175, 176047
Sorry, prediction pasa_asmbl_8657.p1 fails validation.
(ATG)	 AA	174644-174646	GT	TGG
(GAT)	 AG	174868-174975	GT	CGG
(GGT)	 AG	175175-176047	GG	CAG
-recovered pasa_asmbl_8657.p1, initial, 174644, 174646
-recovered pasa_asmbl_8657.p1, internal, 174868, 174975
Valid prediction for CodingQuarry_transcript_10212-T1
Valid prediction for snap_scaffold_12-snap.1231-T1
Couldn't classify 19891, 19975
Couldn't classify 25755, 25820
Sorry, prediction pasa_asmbl_8632.p1 fails validation.
(AGC)	 CC	19891-19975	GT	AGG
(GAA)	 AG	22335-22506	GT	GGG
(GTC)	 AG	23356-23488	GT	AGG
(CTT)	 AG	25102-25260	GT	GGG
(TCC)	 AG	25755-25820	GT	AGG
-recovered pasa_asmbl_8632.p1, internal, 22335, 22506
-recovered pasa_asmbl_8632.p1, internal, 23356, 23488
-recovered pasa_asmbl_8632.p1, internal, 25102, 25260
-recovered pasa_asmbl_8632.p1, internal, 25755, 25820
Valid prediction for GlimmerHMM_glimmerT_30074-T1
Valid prediction for GlimmerHMM_glimmerT_30085-T1
Valid prediction for CodingQuarry_transcript_10223-T1
Valid prediction for GlimmerHMM_glimmerT_30081-T1
Couldn't classify 176075, 176089
Sorry, prediction pasa_asmbl_8658.p1 fails validation.
(TCC)	 CA	176075-176089	GT	AGG
(ACG)	 AG	176240-176427	GT	CGG
(TGT)	 AG	176642-176825	GT	AGG
(GGT)	 AG	176928-177042	GT	AGG
(GTG)	 AG	177300-177427	GT	AGG
(GTG)	 AG	177625-177828	GT	CTG
(AGC)	 AG	177977-178116	GT	AGG
(GTT)	 AG	178375-178540	GT	TGG
(AAA)	 AG	178868-178967	GT	AGG
(GGA)	 AG	179091-179287	AT	GAA
add_exon() Sorry, pasa_asmbl_8658.p1 178868-178967-terminal-3 is invalid.
-recovered pasa_asmbl_8658.p1, terminal, 178868, 178967
-recovered pasa_asmbl_8658.p1, terminal, 179091, 179287
-recovered pasa_asmbl_8658.p1, internal, 176240, 176427
-recovered pasa_asmbl_8658.p1, internal, 176642, 176825
-recovered pasa_asmbl_8658.p1, internal, 176928, 177042
-recovered pasa_asmbl_8658.p1, internal, 177300, 177427
-recovered pasa_asmbl_8658.p1, internal, 177625, 177828
-recovered pasa_asmbl_8658.p1, internal, 177977, 178116
-recovered pasa_asmbl_8658.p1, internal, 178375, 178540
-recovered pasa_asmbl_8658.p1, internal, 178868, 178967
Valid prediction for HiQ_model.g20021.t1
Valid prediction for snap_scaffold_12-snap.1253-T1
Valid prediction for GeneMark_model.51970_t
Valid prediction for CodingQuarry_transcript_10228-T1
Valid prediction for GeneMark_model.51964_t
Valid prediction for pasa_asmbl_8651.p1
Valid prediction for snap_scaffold_12-snap.1247-T1
Valid prediction for HiQ_model.g20003.t1
Valid prediction for pasa_asmbl_8630.p1
Valid prediction for GeneMark_model.51979_t
Valid prediction for Augustus_model.g20019.t1
Valid prediction for GeneMark_model.51958_t
Valid prediction for snap_scaffold_12-snap.1237-T1
Valid prediction for GlimmerHMM_glimmerT_30078-T1
Valid prediction for CodingQuarry_transcript_10224-T1
Valid prediction for CodingQuarry_transcript_10229-T1
Valid prediction for HiQ_model.g20017.t1
Valid prediction for Augustus_model.g20013.t1
Valid prediction for CodingQuarry_transcript_10210-T1
Valid prediction for HiQ_model.g20000.t1
Valid prediction for GeneMark_model.51988_t
Valid prediction for HiQ_model.g20007.t1
Valid prediction for GeneMark_model.51956_t
Valid prediction for GeneMark_model.51961_t
Valid prediction for Augustus_model.g20008.t1
Valid prediction for snap_scaffold_12-snap.1228-T1
Valid prediction for GlimmerHMM_glimmerT_30072-T1
Valid prediction for snap_scaffold_12-snap.1241-T1
Valid prediction for CodingQuarry_transcript_10225-T1
Valid prediction for GeneMark_model.51977_t
Valid prediction for GlimmerHMM_glimmerT_30083-T1
Valid prediction for GeneMark_model.51965_t
Couldn't classify 211316, 212302
Couldn't classify 212660, 212908
Sorry, prediction pasa_asmbl_8665.p1 fails validation.
(GTT)	 AT	211316-212302	GT	AAG
(GTG)	 AG	212660-212908	GC	AGG
-recovered pasa_asmbl_8665.p1, internal, 212660, 212908
Valid prediction for GeneMark_model.51974_t
Valid prediction for pasa_asmbl_8639.p1
Valid prediction for CodingQuarry_transcript_10216-T1
Valid prediction for GlimmerHMM_glimmerT_30064-T1
Valid prediction for snap_scaffold_12-snap.1229-T1
Valid prediction for pasa_asmbl_8653.p1
Valid prediction for GlimmerHMM_glimmerT_30066-T1
Valid prediction for snap_scaffold_12-snap.1256-T1
Couldn't classify 209930, 211156
Sorry, prediction pasa_asmbl_8664.p1 fails validation.
(ATG)	 AG	209275-209431	GT	AGG
(GGG)	 AG	209636-209835	GT	TAG
(AGT)	 AG	209930-211156	GG	CTG
-recovered pasa_asmbl_8664.p1, initial, 209275, 209431
-recovered pasa_asmbl_8664.p1, internal, 209275, 209431
-recovered pasa_asmbl_8664.p1, internal, 209636, 209835
Valid prediction for GlimmerHMM_glimmerT_30060-T1
Valid prediction for GlimmerHMM_glimmerT_30084-T1
Valid prediction for GlimmerHMM_glimmerT_30058-T1
Valid prediction for Augustus_model.g20016.t1
Valid prediction for GeneMark_model.51985_t
Valid prediction for snap_scaffold_12-snap.1236-T1
Valid prediction for Augustus_model.g20022.t1
Valid prediction for CodingQuarry_transcript_10218-T1
Valid prediction for GlimmerHMM_glimmerT_30069-T1
Valid prediction for snap_scaffold_12-snap.1265-T1
Valid prediction for snap_scaffold_12-snap.1258-T1
Valid prediction for HiQ_model.g20011.t1
Couldn't classify 239722, 239891
Sorry, prediction pasa_asmbl_8667.p1 fails validation.
(AGG)	 AC	239722-239891	GT	AGG
(ACT)	 AG	240516-240652	GT	TGG
(GTG)	 AG	240912-241108	GT	TGG
(GAG)	 AG	243231-243443	GT	AAG
(CTC)	 AG	243914-244100	GT	AGG
(GCT)	 AG	244762-244986	GT	AGG
(GTA)	 AG	246259-246421	GT	AAG
(ATT)	 AG	247351-247563	GT	AGG
(GTA)	 AG	248105-248276	GT	AGG
(GAG)	 AG	248421-248480	GG	GAG
add_exon() Sorry, pasa_asmbl_8667.p1 244762-244986-terminal-1 is invalid.
-recovered pasa_asmbl_8667.p1, terminal, 244762, 244986
-recovered pasa_asmbl_8667.p1, terminal, 248421, 248480
-recovered pasa_asmbl_8667.p1, internal, 240516, 240652
-recovered pasa_asmbl_8667.p1, internal, 240912, 241108
-recovered pasa_asmbl_8667.p1, internal, 243231, 243443
-recovered pasa_asmbl_8667.p1, internal, 243914, 244100
-recovered pasa_asmbl_8667.p1, internal, 244762, 244986
-recovered pasa_asmbl_8667.p1, internal, 246259, 246421
-recovered pasa_asmbl_8667.p1, internal, 247351, 247563
-recovered pasa_asmbl_8667.p1, internal, 248105, 248276
Valid prediction for GeneMark_model.51968_t
Valid prediction for snap_scaffold_12-snap.1262-T1
Valid prediction for Augustus_model.g20020.t1
Valid prediction for GeneMark_model.51982_t
Valid prediction for pasa_asmbl_8647.p1
Valid prediction for CodingQuarry_transcript_10217-T1
Valid prediction for GeneMark_model.51963_t
Valid prediction for HiQ_model.g19998.t1
Couldn't classify 144730, 144793
Sorry, prediction pasa_asmbl_8650.p1 fails validation.
(GTG)	 GG	144730-144793	GT	AGG
(CCT)	 AG	144990-145147	GT	CTG
(GAA)	 AG	145325-145489	GT	GAG
(ATT)	 AG	145694-145840	GT	GTG
(ACT)	 AG	146036-146177	GT	AGG
(ACT)	 AG	146371-146583	GT	AGG
(CCA)	 AG	146714-146851	GT	AGG
(GTA)	 AG	146988-147130	GT	ACG
(AAT)	 AG	147968-148104	GT	AGG
(TCT)	 AG	148763-148893	GT	GGG
(GAA)	 AG	149804-149928	GT	TGG
(CGT)	 AG	150245-150347	GT	GCG
(CAC)	 AG	150565-150632	GT	GAG
(CTC)	 AG	150815-150839	GT	TGG
(ATG)	 AG	151200-151261	AG	AAA
-recovered pasa_asmbl_8650.p1, terminal, 151200, 151261
-recovered pasa_asmbl_8650.p1, internal, 144990, 145147
-recovered pasa_asmbl_8650.p1, internal, 145325, 145489
-recovered pasa_asmbl_8650.p1, internal, 145694, 145840
-recovered pasa_asmbl_8650.p1, internal, 146036, 146177
-recovered pasa_asmbl_8650.p1, internal, 146371, 146583
-recovered pasa_asmbl_8650.p1, internal, 146714, 146851
-recovered pasa_asmbl_8650.p1, internal, 146988, 147130
-recovered pasa_asmbl_8650.p1, internal, 147968, 148104
-recovered pasa_asmbl_8650.p1, internal, 148763, 148893
-recovered pasa_asmbl_8650.p1, internal, 149804, 149928
-recovered pasa_asmbl_8650.p1, internal, 150245, 150347
-recovered pasa_asmbl_8650.p1, internal, 150565, 150632
-recovered pasa_asmbl_8650.p1, internal, 150815, 150839
Valid prediction for snap_scaffold_12-snap.1248-T1
Valid prediction for snap_scaffold_12-snap.1226-T1
Valid prediction for HiQ_model.g20018.t1
Couldn't classify 182959, 182976
Sorry, prediction pasa_asmbl_8660.p1 fails validation.
(CTG)	 TC	182959-182976	GT	GGG
(ACT)	 AG	183828-183986	GT	AGG
(GTT)	 AG	184278-184341	GT	CTG
(TGA)	 AG	184514-184656	GT	AGG
(GCT)	 AG	185420-185563	GT	AGG
(GTC)	 AG	185679-185808	GT	TGG
(CCA)	 AG	185989-186193	GT	AGG
(CAC)	 AG	186353-186525	GT	AGG
(GAA)	 AG	186839-186963	GT	CTG
(CTG)	 AG	187442-187600	GC	GAG
-recovered pasa_asmbl_8660.p1, terminal, 187442, 187600
-recovered pasa_asmbl_8660.p1, internal, 183828, 183986
-recovered pasa_asmbl_8660.p1, internal, 184278, 184341
-recovered pasa_asmbl_8660.p1, internal, 184514, 184656
-recovered pasa_asmbl_8660.p1, internal, 185420, 185563
-recovered pasa_asmbl_8660.p1, internal, 185679, 185808
-recovered pasa_asmbl_8660.p1, internal, 185989, 186193
-recovered pasa_asmbl_8660.p1, internal, 186353, 186525
-recovered pasa_asmbl_8660.p1, internal, 186839, 186963
-recovered pasa_asmbl_8660.p1, internal, 187442, 187600
Valid prediction for GeneMark_model.51967_t
Valid prediction for GlimmerHMM_glimmerT_30068-T1
Valid prediction for pasa_asmbl_9174.p1
Valid prediction for HiQ_model.g20012.t1
Valid prediction for snap_scaffold_12-snap.1234-T1
Valid prediction for GlimmerHMM_glimmerT_30076-T1
Valid prediction for snap_scaffold_12-snap.1260-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_10215-T1
Valid prediction for snap_scaffold_12-snap.1232-T1
Valid prediction for GeneMark_model.51959_t
Valid prediction for snap_scaffold_12-snap.1266-T1
Valid prediction for GeneMark_model.51972_t
Valid prediction for snap_scaffold_12-snap.1250-T1
Couldn't classify 265513, 266043
Sorry, prediction pasa_asmbl_7672.p1 fails validation.
(ATG)	 CC	265513-266043	CC	CGC
Couldn't classify 213521, 213541
Sorry, prediction pasa_asmbl_7673.p1 fails validation.
(ATT)	 TC	213521-213541	GT	AGG
(GTG)	 AG	213683-213732	GT	CTG
(GTG)	 AG	213933-214164	GT	AGG
(GGC)	 AG	214397-214546	GT	AGG
(GCC)	 AG	214656-214784	GT	CGG
(GTT)	 AG	215051-215166	GT	GGG
(TTG)	 AG	215271-215367	TT	GAT
-recovered pasa_asmbl_7673.p1, terminal, 215271, 215367
-recovered pasa_asmbl_7673.p1, internal, 213683, 213732
-recovered pasa_asmbl_7673.p1, internal, 213933, 214164
-recovered pasa_asmbl_7673.p1, internal, 214397, 214546
-recovered pasa_asmbl_7673.p1, internal, 214656, 214784
-recovered pasa_asmbl_7673.p1, internal, 215051, 215166
Valid prediction for snap_scaffold_12-snap.1242-T1
Valid prediction for snap_scaffold_12-snap.1227-T1
Valid prediction for Augustus_model.g20009.t1
Valid prediction for snap_scaffold_12-snap.1224-T1
Valid prediction for snap_scaffold_12-snap.1225-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GeneMark_model.51955_t
Valid prediction for GeneMark_model.51973_t
Valid prediction for snap_scaffold_12-snap.1264-T1
Valid prediction for GeneMark_model.51960_t
Valid prediction for GlimmerHMM_glimmerT_30065-T1
Valid prediction for GlimmerHMM_glimmerT_30079-T1
Valid prediction for GeneMark_model.51962_t
Valid prediction for GeneMark_model.51986_t
Valid prediction for GeneMark_model.51957_t
Couldn't classify 382719, 382824
Couldn't classify 383723, 383926
Sorry, prediction pasa_asmbl_7659.p1 fails validation.
(CTG)	 CT	382719-382824	GT	AGG
(CTG)	 AG	383059-383282	GT	AGG
(GTG)	 AG	383723-383926	AC	CCA
-recovered pasa_asmbl_7659.p1, internal, 383059, 383282
Valid prediction for CodingQuarry_transcript_10227-T1
Valid prediction for snap_scaffold_12-snap.1235-T1
Valid prediction for GeneMark_model.51984_t
Valid prediction for snap_scaffold_12-snap.1233-T1
Valid prediction for GeneMark_model.51971_t
Valid prediction for GlimmerHMM_glimmerT_30082-T1
Valid prediction for GlimmerHMM_glimmerT_30071-T1
Valid prediction for CodingQuarry_transcript_10222-T1
Valid prediction for GeneMark_model.51969_t
Valid prediction for Augustus_model.g20004.t1
Valid prediction for GlimmerHMM_glimmerT_30077-T1
Valid prediction for CodingQuarry_transcript_10214-T1
Valid prediction for snap_scaffold_12-snap.1261-T1
Valid prediction for GlimmerHMM_glimmerT_30059-T1
Valid prediction for HiQ_model.g20002.t1
Couldn't classify 312649, 312696
Sorry, prediction pasa_asmbl_7665.p1 fails validation.
(GGT)	 CT	312649-312696	GT	AGG
(GAG)	 AG	315173-315234	GT	ATG
(ATA)	 AG	315330-315368	GT	AGG
(CTC)	 AG	315482-315585	GT	GGG
(GTG)	 AG	315800-315855	GT	AGG
(ATA)	 AG	316048-316164	GT	AGG
(GCT)	 AG	316260-316385	GT	AGG
(AAA)	 AG	316543-316680	GT	AGG
(GCG)	 AG	316957-317081	GT	AAG
(TGT)	 AG	317233-317782	GT	CGG
(GAG)	 AG	317942-318053	GT	AGG
(GAA)	 AG	318152-318171	GT	AGG
(GAA)	 AG	318258-318380	GT	AGG
(GCT)	 AG	318476-318604	GT	AGG
(TGT)	 AG	318697-318825	GT	AGG
(TGT)	 AG	318932-319062	GT	GGG
(ACA)	 AG	319204-319510	GT	TGG
(ATC)	 AG	319736-319883	GT	TGG
(GTG)	 AG	320081-320196	GT	AGG
(AAA)	 AG	320370-320432	CG	AAC
-recovered pasa_asmbl_7665.p1, terminal, 320370, 320432
-recovered pasa_asmbl_7665.p1, internal, 315173, 315234
-recovered pasa_asmbl_7665.p1, internal, 315330, 315368
-recovered pasa_asmbl_7665.p1, internal, 315482, 315585
-recovered pasa_asmbl_7665.p1, internal, 315800, 315855
-recovered pasa_asmbl_7665.p1, internal, 316048, 316164
-recovered pasa_asmbl_7665.p1, internal, 316260, 316385
-recovered pasa_asmbl_7665.p1, internal, 316543, 316680
-recovered pasa_asmbl_7665.p1, internal, 316957, 317081
-recovered pasa_asmbl_7665.p1, internal, 317233, 317782
-recovered pasa_asmbl_7665.p1, internal, 317942, 318053
-recovered pasa_asmbl_7665.p1, internal, 318152, 318171
-recovered pasa_asmbl_7665.p1, internal, 318258, 318380
-recovered pasa_asmbl_7665.p1, internal, 318476, 318604
-recovered pasa_asmbl_7665.p1, internal, 318697, 318825
-recovered pasa_asmbl_7665.p1, internal, 318932, 319062
-recovered pasa_asmbl_7665.p1, internal, 319204, 319510
-recovered pasa_asmbl_7665.p1, internal, 319736, 319883
-recovered pasa_asmbl_7665.p1, internal, 320081, 320196
Valid prediction for CodingQuarry_transcript_10226-T1
Valid prediction for Augustus_model.g19997.t1
Valid prediction for snap_scaffold_12-snap.1244-T1
Valid prediction for GlimmerHMM_glimmerT_30067-T1
Valid prediction for GlimmerHMM_glimmerT_30075-T1
Valid prediction for HiQ_model.g20015.t1
Valid prediction for snap_scaffold_12-snap.1263-T1
Valid prediction for CodingQuarry_transcript_10221-T1
Valid prediction for Augustus_model.g20024.t1
Valid prediction for snap_scaffold_12-snap.1243-T1
Valid prediction for GeneMark_model.51987_t
Valid prediction for GlimmerHMM_glimmerT_30057-T1
Valid prediction for pasa_asmbl_7671.p1
Valid prediction for GlimmerHMM_glimmerT_30063-T1
Valid prediction for GeneMark_model.51975_t
Valid prediction for Augustus_model.g20010.t1
Valid prediction for Augustus_model.g19999.t1
Valid prediction for GlimmerHMM_glimmerT_30070-T1
Valid prediction for snap_scaffold_12-snap.1230-T1
Valid prediction for GeneMark_model.51966_t
Valid prediction for snap_scaffold_12-snap.1238-T1
Valid prediction for GeneMark_model.51978_t
Valid prediction for GeneMark_model.51983_t
Valid prediction for snap_scaffold_12-snap.1245-T1
Valid prediction for pasa_asmbl_7660.p1
Valid prediction for Augustus_model.g20023.t1
Valid prediction for HiQ_model.g20001.t1
Valid prediction for HiQ_model.g20006.t1
Valid prediction for GlimmerHMM_glimmerT_30062-T1
Valid prediction for GlimmerHMM_glimmerT_30073-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 33679, rend_intergenic: 28529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 288168, rend_intergenic: 286091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 386293
-exon list size: 637


building trellis

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10.0    
10.2    
10.3    
10.5    
10.6    
10.8    
11.0    
11.1    
11.3    
11.4    
11.6    
11.7    
11.9    
12.1    
12.2    
12.4    
12.5    
12.7    
12.8    
13.0    
13.1    
13.3    
13.5    
13.6    
13.8    
13.9    
14.1    
14.2    
14.4    
14.6    
14.7    
14.9    
15.0    
15.2    
15.3    
15.5    
15.6    
15.8    
16.0    
16.1    
16.3    
16.4    
16.6    
16.7    
16.9    
17.1    
17.2    
17.4    
17.5    
17.7    
17.8    
18.0    
18.2    
18.3    
18.5    
18.6    
18.8    
18.9    
19.1    
19.2    
19.4    
19.6    
19.7    
19.9    
20.0    
20.2    
20.3    
20.5    
20.7    
20.8    
21.0    
21.1    
21.3    
21.4    
21.6    
21.8    
21.9    
22.1    
22.2    
22.4    
22.5    
22.7    
22.8    
23.0    
23.2    
23.3    
23.5    
23.6    
23.8    
23.9    
24.1    
24.3    
24.4    
24.6    
24.7    
24.9    
25.0    
25.2    
25.4    
25.5    
25.7    
25.8    
26.0    
26.1    
26.3    
26.4    
26.6    
26.8    
26.9    
27.1    
27.2    
27.4    
27.5    
27.7    
27.9    
28.0    
28.2    
28.3    
28.5    
28.6    
28.8    
29.0    
29.1    
29.3    
29.4    
29.6    
29.7    
29.9    
30.0    
30.2    
30.4    
30.5    
30.7    
30.8    
31.0    
31.1    
31.3    
31.5    
31.6    
31.8    
31.9    
32.1    
32.2    
32.4    
32.6    
32.7    
32.9    
33.0    
33.2    
33.3    
33.5    
33.6    
33.8    
34.0    
34.1    
34.3    
34.4    
34.6    
34.7    
34.9    
35.1    
35.2    
35.4    
35.5    
35.7    
35.8    
36.0    
36.2    
36.3    
36.5    
36.6    
36.8    
36.9    
37.1    
37.2    
37.4    
37.6    
37.7    
37.9    
38.0    
38.2    
38.3    
38.5    
38.7    
38.8    
39.0    
39.1    
39.3    
39.4    
39.6    
39.7    
39.9    
40.1    
40.2    
40.4    
40.5    
40.7    
40.8    
41.0    
41.2    
41.3    
41.5    
41.6    
41.8    
41.9    
42.1    
42.3    
42.4    
42.6    
42.7    
42.9    
43.0    
43.2    
43.3    
43.5    
43.7    
43.8    
44.0    
44.1    
44.3    
44.4    
44.6    
44.8    
44.9    
45.1    
45.2    
45.4    
45.5    
45.7    
45.9    
46.0    
46.2    
46.3    
46.5    
46.6    
46.8    
46.9    
47.1    
47.3    
47.4    
47.6    
47.7    
47.9    
48.0    
48.2    
48.4    
48.5    
48.7    
48.8    
49.0    
49.1    
49.3    
49.5    
49.6    
49.8    
49.9    
50.1    
50.2    
50.4    
50.5    
50.7    
50.9    
51.0    
51.2    
51.3    
51.5    
51.6    
51.8    
52.0    
52.1    
52.3    
52.4    
52.6    
52.7    
52.9    
53.1    
53.2    
53.4    
53.5    
53.7    
53.8    
54.0    
54.1    
54.3    
54.5    
54.6    
54.8    
54.9    
55.1    
55.2    
55.4    
55.6    
55.7    
55.9    
56.0    
56.2    
56.3    
56.5    
56.7    
56.8    
57.0    
57.1    
57.3    
57.4    
57.6    
57.7    
57.9    
58.1    
58.2    
58.4    
58.5    
58.7    
58.8    
59.0    
59.2    
59.3    
59.5    
59.6    
59.8    
59.9    
60.1    
60.3    
60.4    
60.6    
60.7    
60.9    
61.0    
61.2    
61.3    
61.5    
61.7    
61.8    
62.0    
62.1    
62.3    
62.4    
62.6    
62.8    
62.9    
63.1    
63.2    
63.4    
63.5    
63.7    
63.8    
64.0    
64.2    
64.3    
64.5    
64.6    
64.8    
64.9    
65.1    
65.3    
65.4    
65.6    
65.7    
65.9    
66.0    
66.2    
66.4    
66.5    
66.7    
66.8    
67.0    
67.1    
67.3    
67.4    
67.6    
67.8    
67.9    
68.1    
68.2    
68.4    
68.5    
68.7    
68.9    
69.0    
69.2    
69.3    
69.5    
69.6    
69.8    
70.0    
70.1    
70.3    
70.4    
70.6    
70.7    
70.9    
71.0    
71.2    
71.4    
71.5    
71.7    
71.8    
72.0    
72.1    
72.3    
72.5    
72.6    
72.8    
72.9    
73.1    
73.2    
73.4    
73.6    
73.7    
73.9    
74.0    
74.2    
74.3    
74.5    
74.6    
74.8    
75.0    
75.1    
75.3    
75.4    
75.6    
75.7    
75.9    
76.1    
76.2    
76.4    
76.5    
76.7    
76.8    
77.0    
77.2    
77.3    
77.5    
77.6    
77.8    
77.9    
78.1    
78.2    
78.4    
78.6    
78.7    
78.9    
79.0    
79.2    
79.3    
79.5    
79.7    
79.8    
80.0    
80.1    
80.3    
80.4    
80.6    
80.8    
80.9    
81.1    
81.2    
81.4    
81.5    
81.7    
81.8    
82.0    
82.2    
82.3    
82.5    
82.6    
82.8    
82.9    
83.1    
83.3    
83.4    
83.6    
83.7    
83.9    
84.0    
84.2    
84.4    
84.5    
84.7    
84.8    
85.0    
85.1    
85.3    
85.4    
85.6    
85.8    
85.9    
86.1    
86.2    
86.4    
86.5    
86.7    
86.9    
87.0    
87.2    
87.3    
87.5    
87.6    
87.8    
87.9    
88.1    
88.3    
88.4    
88.6    
88.7    
88.9    
89.0    
89.2    
89.4    
89.5    
89.7    
89.8    
90.0    
90.1    
90.3    
90.5    
90.6    
90.8    
90.9    
91.1    
91.2    
91.4    
91.5    
91.7    
91.9    
92.0    
92.2    
92.3    
92.5    
92.6    
92.8    
93.0    
93.1    
93.3    
93.4    
93.6    
93.7    
93.9    
94.1    
94.2    
94.4    
94.5    
94.7    
94.8    
95.0    
95.1    
95.3    
95.5    
95.6    
95.8    
95.9    
96.1    
96.2    
96.4    
96.6    
96.7    
96.9    
97.0    
97.2    
97.3    
97.5    
97.7    
97.8    
98.0    
98.1    
98.3    
98.4    
98.6    
98.7    
98.9    
99.1    
99.2    
99.4    
99.5    
99.7    
99.8    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 33679, rend_intergenic: 28529  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 288168, rend_intergenic: 286091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 28 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 366991 - 386293
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 367811 - 386293
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 374205 - 386293
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support