-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_5896306-6137071

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_30026-T1
Valid prediction for GlimmerHMM_glimmerT_30028-T1
Valid prediction for snap_scaffold_12-snap.1180-T1
Valid prediction for GlimmerHMM_glimmerT_30018-T1
Valid prediction for GeneMark_model.51894_t
Valid prediction for snap_scaffold_12-snap.1163-T1
Valid prediction for snap_scaffold_12-snap.1173-T1
Valid prediction for snap_scaffold_12-snap.1177-T1
Valid prediction for Augustus_model.g19983.t1
Valid prediction for GeneMark_model.51895_t
Valid prediction for GeneMark_model.51878_t
Valid prediction for GlimmerHMM_glimmerT_30021-T1
Valid prediction for GeneMark_model.51897_t
Valid prediction for GlimmerHMM_glimmerT_30023-T1
Valid prediction for snap_scaffold_12-snap.1164-T1
Valid prediction for GlimmerHMM_glimmerT_30015-T1
Valid prediction for GeneMark_model.51882_t
Valid prediction for Augustus_model.g19984.t1
Valid prediction for GlimmerHMM_glimmerT_30031-T1
Valid prediction for snap_scaffold_12-snap.1170-T1
Valid prediction for GeneMark_model.51888_t
Valid prediction for snap_scaffold_12-snap.1172-T1
Valid prediction for GeneMark_model.51887_t
Valid prediction for GeneMark_model.51890_t
Valid prediction for GeneMark_model.51891_t
Valid prediction for GlimmerHMM_glimmerT_30025-T1
Valid prediction for GeneMark_model.51893_t
Valid prediction for GeneMark_model.51877_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_30017-T1
Valid prediction for snap_scaffold_12-snap.1175-T1
Valid prediction for Augustus_model.g19981.t1
Valid prediction for GeneMark_model.51886_t
Valid prediction for GlimmerHMM_glimmerT_30030-T1
Valid prediction for GeneMark_model.51889_t
Valid prediction for GlimmerHMM_glimmerT_30020-T1
Valid prediction for snap_scaffold_12-snap.1179-T1
Valid prediction for GlimmerHMM_glimmerT_30016-T1
Valid prediction for snap_scaffold_12-snap.1167-T1
Valid prediction for GeneMark_model.51896_t
Valid prediction for snap_scaffold_12-snap.1169-T1
Valid prediction for GlimmerHMM_glimmerT_30022-T1
Valid prediction for GeneMark_model.51875_t
Valid prediction for GlimmerHMM_glimmerT_30029-T1
Valid prediction for GlimmerHMM_glimmerT_30024-T1
Valid prediction for GeneMark_model.51898_t
Valid prediction for Augustus_model.g19982.t1
Valid prediction for GlimmerHMM_glimmerT_30027-T1
Valid prediction for snap_scaffold_12-snap.1178-T1
Valid prediction for Augustus_model.g19985.t1
Valid prediction for GeneMark_model.51883_t
Valid prediction for snap_scaffold_12-snap.1174-T1
Valid prediction for snap_scaffold_12-snap.1165-T1
Valid prediction for GlimmerHMM_glimmerT_30019-T1
Valid prediction for snap_scaffold_12-snap.1168-T1
Valid prediction for GeneMark_model.51892_t
Valid prediction for snap_scaffold_12-snap.1171-T1
Valid prediction for GeneMark_model.51899_t
Valid prediction for snap_scaffold_12-snap.1166-T1
Valid prediction for GeneMark_model.51884_t
Valid prediction for GeneMark_model.51885_t
Valid prediction for snap_scaffold_12-snap.1176-T1
Valid prediction for GeneMark_model.51879_t
Valid prediction for GeneMark_model.51876_t
Valid prediction for GeneMark_model.51881_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 240766
-exon list size: 240


building trellis

0.4    
0.8    
1.2    
1.7    
2.1    
2.5    
2.9    
3.3    
3.7    
4.1    
4.5    
5.0    
5.4    
5.8    
6.2    
6.6    
7.0    
7.4    
7.9    
8.3    
8.7    
9.1    
9.5    
9.9    
10.3    
10.7    
11.2    
11.6    
12.0    
12.4    
12.8    
13.2    
13.6    
14.0    
14.5    
14.9    
15.3    
15.7    
16.1    
16.5    
16.9    
17.4    
17.8    
18.2    
18.6    
19.0    
19.4    
19.8    
20.2    
20.7    
21.1    
21.5    
21.9    
22.3    
22.7    
23.1    
23.6    
24.0    
24.4    
24.8    
25.2    
25.6    
26.0    
26.4    
26.9    
27.3    
27.7    
28.1    
28.5    
28.9    
29.3    
29.8    
30.2    
30.6    
31.0    
31.4    
31.8    
32.2    
32.6    
33.1    
33.5    
33.9    
34.3    
34.7    
35.1    
35.5    
36.0    
36.4    
36.8    
37.2    
37.6    
38.0    
38.4    
38.8    
39.3    
39.7    
40.1    
40.5    
40.9    
41.3    
41.7    
42.1    
42.6    
43.0    
43.4    
43.8    
44.2    
44.6    
45.0    
45.5    
45.9    
46.3    
46.7    
47.1    
47.5    
47.9    
48.3    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.7    
52.1    
52.5    
52.9    
53.3    
53.7    
54.1    
54.5    
55.0    
55.4    
55.8    
56.2    
56.6    
57.0    
57.4    
57.9    
58.3    
58.7    
59.1    
59.5    
59.9    
60.3    
60.7    
61.2    
61.6    
62.0    
62.4    
62.8    
63.2    
63.6    
64.0    
64.5    
64.9    
65.3    
65.7    
66.1    
66.5    
66.9    
67.4    
67.8    
68.2    
68.6    
69.0    
69.4    
69.8    
70.2    
70.7    
71.1    
71.5    
71.9    
72.3    
72.7    
73.1    
73.6    
74.0    
74.4    
74.8    
75.2    
75.6    
76.0    
76.4    
76.9    
77.3    
77.7    
78.1    
78.5    
78.9    
79.3    
79.8    
80.2    
80.6    
81.0    
81.4    
81.8    
82.2    
82.6    
83.1    
83.5    
83.9    
84.3    
84.7    
85.1    
85.5    
86.0    
86.4    
86.8    
87.2    
87.6    
88.0    
88.4    
88.8    
89.3    
89.7    
90.1    
90.5    
90.9    
91.3    
91.7    
92.1    
92.6    
93.0    
93.4    
93.8    
94.2    
94.6    
95.0    
95.5    
95.9    
96.3    
96.7    
97.1    
97.5    
97.9    
98.3    
98.8    
99.2    
99.6    
-found 13 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 8 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 23766
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 23349
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 22950
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 22323
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 7026 - 22323
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 227432 - 240766
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 230740 - 240766
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support