-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_475617-585090

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.50627_t
Valid prediction for GeneMark_model.50608_t
Valid prediction for GeneMark_model.50606_t
Valid prediction for GeneMark_model.50631_t
Valid prediction for GeneMark_model.50621_t
Valid prediction for GlimmerHMM_glimmerT_29338-T1
Valid prediction for GeneMark_model.50625_t
Valid prediction for snap_scaffold_12-snap.114-T1
Valid prediction for snap_scaffold_12-snap.128-T1
Valid prediction for GeneMark_model.50619_t
Valid prediction for GlimmerHMM_glimmerT_29339-T1
Valid prediction for snap_scaffold_12-snap.120-T1
Valid prediction for GlimmerHMM_glimmerT_29334-T1
Valid prediction for GeneMark_model.50611_t
Valid prediction for snap_scaffold_12-snap.133-T1
Valid prediction for GlimmerHMM_glimmerT_29335-T1
Valid prediction for GeneMark_model.50622_t
Valid prediction for GlimmerHMM_glimmerT_29343-T1
Valid prediction for GeneMark_model.50614_t
Valid prediction for snap_scaffold_12-snap.130-T1
Valid prediction for GlimmerHMM_glimmerT_29341-T1
Valid prediction for snap_scaffold_12-snap.127-T1
Valid prediction for snap_scaffold_12-snap.122-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.50610_t
Valid prediction for snap_scaffold_12-snap.126-T1
Valid prediction for snap_scaffold_12-snap.125-T1
Valid prediction for snap_scaffold_12-snap.117-T1
Valid prediction for GeneMark_model.50617_t
Valid prediction for snap_scaffold_12-snap.111-T1
Valid prediction for GeneMark_model.50615_t
Valid prediction for snap_scaffold_12-snap.116-T1
Valid prediction for GeneMark_model.50612_t
Valid prediction for GeneMark_model.50605_t
Valid prediction for GlimmerHMM_glimmerT_29346-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.113-T1
Valid prediction for snap_scaffold_12-snap.121-T1
Valid prediction for GlimmerHMM_glimmerT_29337-T1
Valid prediction for GeneMark_model.50607_t
Valid prediction for GeneMark_model.50628_t
Valid prediction for GeneMark_model.50623_t
Valid prediction for GeneMark_model.50604_t
Valid prediction for GeneMark_model.50630_t
Valid prediction for snap_scaffold_12-snap.112-T1
Valid prediction for GeneMark_model.50624_t
Valid prediction for Augustus_model.g19565.t1
Valid prediction for snap_scaffold_12-snap.129-T1
Valid prediction for GlimmerHMM_glimmerT_29344-T1
Valid prediction for GeneMark_model.50613_t
Valid prediction for GlimmerHMM_glimmerT_29340-T1
Valid prediction for snap_scaffold_12-snap.119-T1
Valid prediction for GlimmerHMM_glimmerT_29336-T1
Valid prediction for snap_scaffold_12-snap.115-T1
Valid prediction for GeneMark_model.50629_t
Valid prediction for GeneMark_model.50616_t
Valid prediction for snap_scaffold_12-snap.132-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_29345-T1
Valid prediction for GeneMark_model.50626_t
Valid prediction for GeneMark_model.50618_t
Valid prediction for snap_scaffold_12-snap.131-T1
Valid prediction for snap_scaffold_12-snap.123-T1
Valid prediction for GlimmerHMM_glimmerT_29342-T1
Valid prediction for GeneMark_model.50609_t
Valid prediction for snap_scaffold_12-snap.118-T1
Valid prediction for snap_scaffold_12-snap.124-T1
Valid prediction for snap_scaffold_12-snap.134-T1
Valid prediction for snap_scaffold_12-snap.135-T1
Valid prediction for GeneMark_model.50620_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 23638, rend_intergenic: 18275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43012, rend_intergenic: 40240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47177, rend_intergenic: 45011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48864, rend_intergenic: 48415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91423, rend_intergenic: 82979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96482, rend_intergenic: 94921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106108, rend_intergenic: 97064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 109474
-exon list size: 345


building trellis

0.3    
0.6    
0.9    
1.2    
1.4    
1.7    
2.0    
2.3    
2.6    
2.9    
3.2    
3.5    
3.7    
4.0    
4.3    
4.6    
4.9    
5.2    
5.5    
5.8    
6.1    
6.3    
6.6    
6.9    
7.2    
7.5    
7.8    
8.1    
8.4    
8.6    
8.9    
9.2    
9.5    
9.8    
10.1    
10.4    
10.7    
11.0    
11.2    
11.5    
11.8    
12.1    
12.4    
12.7    
13.0    
13.3    
13.5    
13.8    
14.1    
14.4    
14.7    
15.0    
15.3    
15.6    
15.9    
16.1    
16.4    
16.7    
17.0    
17.3    
17.6    
17.9    
18.2    
18.4    
18.7    
19.0    
19.3    
19.6    
19.9    
20.2    
20.5    
20.7    
21.0    
21.3    
21.6    
21.9    
22.2    
22.5    
22.8    
23.1    
23.3    
23.6    
23.9    
24.2    
24.5    
24.8    
25.1    
25.4    
25.6    
25.9    
26.2    
26.5    
26.8    
27.1    
27.4    
27.7    
28.0    
28.2    
28.5    
28.8    
29.1    
29.4    
29.7    
30.0    
30.3    
30.5    
30.8    
31.1    
31.4    
31.7    
32.0    
32.3    
32.6    
32.9    
33.1    
33.4    
33.7    
34.0    
34.3    
34.6    
34.9    
35.2    
35.4    
35.7    
36.0    
36.3    
36.6    
36.9    
37.2    
37.5    
37.8    
38.0    
38.3    
38.6    
38.9    
39.2    
39.5    
39.8    
40.1    
40.3    
40.6    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.7    
42.9    
43.2    
43.5    
43.8    
44.1    
44.4    
44.7    
45.0    
45.2    
45.5    
45.8    
46.1    
46.4    
46.7    
47.0    
47.3    
47.6    
47.8    
48.1    
48.4    
48.7    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.3    
51.6    
51.9    
52.2    
52.4    
52.7    
53.0    
53.3    
53.6    
53.9    
54.2    
54.5    
54.8    
55.0    
55.3    
55.6    
55.9    
56.2    
56.5    
56.8    
57.1    
57.3    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.4    
59.7    
59.9    
60.2    
60.5    
60.8    
61.1    
61.4    
61.7    
62.0    
62.2    
62.5    
62.8    
63.1    
63.4    
63.7    
64.0    
64.3    
64.6    
64.8    
65.1    
65.4    
65.7    
66.0    
66.3    
66.6    
66.9    
67.1    
67.4    
67.7    
68.0    
68.3    
68.6    
68.9    
69.2    
69.5    
69.7    
70.0    
70.3    
70.6    
70.9    
71.2    
71.5    
71.8    
72.0    
72.3    
72.6    
72.9    
73.2    
73.5    
73.8    
74.1    
74.4    
74.6    
74.9    
75.2    
75.5    
75.8    
76.1    
76.4    
76.7    
76.9    
77.2    
77.5    
77.8    
78.1    
78.4    
78.7    
79.0    
79.3    
79.5    
79.8    
80.1    
80.4    
80.7    
81.0    
81.3    
81.6    
81.8    
82.1    
82.4    
82.7    
83.0    
83.3    
83.6    
83.9    
84.1    
84.4    
84.7    
85.0    
85.3    
85.6    
85.9    
86.2    
86.5    
86.7    
87.0    
87.3    
87.6    
87.9    
88.2    
88.5    
88.8    
89.0    
89.3    
89.6    
89.9    
90.2    
90.5    
90.8    
91.1    
91.4    
91.6    
91.9    
92.2    
92.5    
92.8    
93.1    
93.4    
93.7    
93.9    
94.2    
94.5    
94.8    
95.1    
95.4    
95.7    
96.0    
96.3    
96.5    
96.8    
97.1    
97.4    
97.7    
98.0    
98.3    
98.6    
98.8    
99.1    
99.4    
99.7    
-found 19 predictions from path traversal
Error with prediction: snap lend_intergenic: 23638, rend_intergenic: 18275  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43012, rend_intergenic: 40240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 47177, rend_intergenic: 45011  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48864, rend_intergenic: 48415  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91423, rend_intergenic: 82979  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96482, rend_intergenic: 94921  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106108, rend_intergenic: 97064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support