-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_3539214-3711617

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.51319_t
Valid prediction for Augustus_model.g19781.t1
Valid prediction for snap_scaffold_12-snap.748-T1
Valid prediction for snap_scaffold_12-snap.739-T1
Valid prediction for GeneMark_model.51347_t
Valid prediction for Augustus_model.g19784.t1
Valid prediction for Augustus_model.g19773.t1
Valid prediction for Augustus_model.g19779.t1
Valid prediction for GeneMark_model.51315_t
Valid prediction for GlimmerHMM_glimmerT_29703-T1
Valid prediction for GeneMark_model.51342_t
Valid prediction for snap_scaffold_12-snap.750-T1
Valid prediction for GeneMark_model.51312_t
Valid prediction for snap_scaffold_12-snap.744-T1
Valid prediction for GeneMark_model.51338_t
Valid prediction for GeneMark_model.51344_t
Valid prediction for Augustus_model.g19775.t1
Valid prediction for snap_scaffold_12-snap.732-T1
Valid prediction for snap_scaffold_12-snap.736-T1
Valid prediction for GlimmerHMM_glimmerT_29721-T1
Valid prediction for GeneMark_model.51322_t
Valid prediction for GlimmerHMM_glimmerT_29702-T1
Valid prediction for snap_scaffold_12-snap.726-T1
Valid prediction for GeneMark_model.51328_t
Valid prediction for GlimmerHMM_glimmerT_29705-T1
Valid prediction for GeneMark_model.51324_t
Valid prediction for GeneMark_model.51314_t
Valid prediction for GlimmerHMM_glimmerT_29716-T1
Valid prediction for GlimmerHMM_glimmerT_29713-T1
Valid prediction for GeneMark_model.51310_t
Valid prediction for snap_scaffold_12-snap.724-T1
Valid prediction for GeneMark_model.51323_t
Valid prediction for GeneMark_model.51345_t
Valid prediction for GeneMark_model.51333_t
Valid prediction for snap_scaffold_12-snap.742-T1
Valid prediction for Augustus_model.g19783.t1
Valid prediction for GeneMark_model.51326_t
Valid prediction for GeneMark_model.51340_t
Valid prediction for snap_scaffold_12-snap.753-T1
Valid prediction for GlimmerHMM_glimmerT_29704-T1
Valid prediction for snap_scaffold_12-snap.743-T1
Valid prediction for Augustus_model.g19776.t1
Valid prediction for GlimmerHMM_glimmerT_29712-T1
Valid prediction for GeneMark_model.51336_t
Valid prediction for snap_scaffold_12-snap.747-T1
Valid prediction for snap_scaffold_12-snap.729-T1
Valid prediction for snap_scaffold_12-snap.754-T1
Valid prediction for GeneMark_model.51335_t
Valid prediction for snap_scaffold_12-snap.723-T1
Valid prediction for snap_scaffold_12-snap.734-T1
Valid prediction for Augustus_model.g19769.t1
Valid prediction for Augustus_model.g19780.t1
Valid prediction for snap_scaffold_12-snap.749-T1
Valid prediction for GlimmerHMM_glimmerT_29719-T1
Valid prediction for GeneMark_model.51331_t
Valid prediction for snap_scaffold_12-snap.719-T1
Valid prediction for GlimmerHMM_glimmerT_29718-T1
Valid prediction for GeneMark_model.51317_t
Valid prediction for GeneMark_model.51329_t
Valid prediction for GlimmerHMM_glimmerT_29720-T1
Valid prediction for GeneMark_model.51311_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.717-T1
Valid prediction for Augustus_model.g19782.t1
Valid prediction for snap_scaffold_12-snap.737-T1
Valid prediction for snap_scaffold_12-snap.731-T1
Valid prediction for GeneMark_model.51348_t
Valid prediction for GeneMark_model.51330_t
Valid prediction for GlimmerHMM_glimmerT_29708-T1
Valid prediction for GeneMark_model.51321_t
Valid prediction for snap_scaffold_12-snap.730-T1
Valid prediction for GeneMark_model.51318_t
Valid prediction for GeneMark_model.51341_t
Valid prediction for GlimmerHMM_glimmerT_29710-T1
Valid prediction for Augustus_model.g19772.t1
Valid prediction for snap_scaffold_12-snap.741-T1
Valid prediction for snap_scaffold_12-snap.751-T1
Valid prediction for GeneMark_model.51343_t
Valid prediction for snap_scaffold_12-snap.745-T1
Valid prediction for GeneMark_model.51337_t
Valid prediction for snap_scaffold_12-snap.728-T1
Valid prediction for snap_scaffold_12-snap.725-T1
Valid prediction for snap_scaffold_12-snap.722-T1
Valid prediction for GlimmerHMM_glimmerT_29709-T1
Valid prediction for snap_scaffold_12-snap.718-T1
Valid prediction for snap_scaffold_12-snap.738-T1
Valid prediction for GlimmerHMM_glimmerT_29711-T1
Valid prediction for snap_scaffold_12-snap.727-T1
Valid prediction for GeneMark_model.51346_t
Valid prediction for GeneMark_model.51309_t
Valid prediction for Augustus_model.g19778.t1
Valid prediction for Augustus_model.g19774.t1
Valid prediction for GeneMark_model.51327_t
Valid prediction for GlimmerHMM_glimmerT_29707-T1
Valid prediction for snap_scaffold_12-snap.733-T1
Valid prediction for GeneMark_model.51325_t
Valid prediction for Augustus_model.g19777.t1
Valid prediction for snap_scaffold_12-snap.721-T1
Valid prediction for GeneMark_model.51316_t
Valid prediction for snap_scaffold_12-snap.740-T1
Valid prediction for snap_scaffold_12-snap.746-T1
Valid prediction for GlimmerHMM_glimmerT_29714-T1
Valid prediction for snap_scaffold_12-snap.735-T1
Valid prediction for GlimmerHMM_glimmerT_29717-T1
Valid prediction for GlimmerHMM_glimmerT_29715-T1
Valid prediction for GeneMark_model.51313_t
Valid prediction for Augustus_model.g19771.t1
Valid prediction for GeneMark_model.51332_t
Valid prediction for GlimmerHMM_glimmerT_29706-T1
Valid prediction for snap_scaffold_12-snap.720-T1
Valid prediction for GeneMark_model.51334_t
Valid prediction for snap_scaffold_12-snap.755-T1
Valid prediction for GeneMark_model.51339_t
Valid prediction for snap_scaffold_12-snap.752-T1
Valid prediction for Augustus_model.g19768.t1
Valid prediction for GlimmerHMM_glimmerT_29701-T1
Valid prediction for Augustus_model.g19770.t1
Valid prediction for GeneMark_model.51320_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15375, rend_intergenic: 14996  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33719, rend_intergenic: 25357  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37168, rend_intergenic: 36255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38318, rend_intergenic: 37725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39338, rend_intergenic: 38509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107243, rend_intergenic: 104052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135629, rend_intergenic: 127039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140519, rend_intergenic: 135866  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159895, rend_intergenic: 153522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165183, rend_intergenic: 160105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169857, rend_intergenic: 168622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 172404
-exon list size: 562


building trellis

0.2    
0.4    
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0.9    
1.1    
1.2    
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2.1    
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3.5    
3.7    
3.9    
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4.6    
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5.1    
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5.5    
5.7    
5.9    
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6.7    
6.9    
7.1    
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7.6    
7.8    
8.0    
8.2    
8.3    
8.5    
8.7    
8.9    
9.0    
9.2    
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9.6    
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9.9    
10.1    
10.3    
10.5    
10.6    
10.8    
11.0    
11.2    
11.3    
11.5    
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11.9    
12.1    
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12.6    
12.8    
12.9    
13.1    
13.3    
13.5    
13.7    
13.8    
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15.6    
15.8    
16.0    
16.1    
16.3    
16.5    
16.7    
16.8    
17.0    
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17.4    
17.6    
17.7    
17.9    
18.1    
18.3    
18.4    
18.6    
18.8    
19.0    
19.1    
19.3    
19.5    
19.7    
19.9    
20.0    
20.2    
20.4    
20.6    
20.7    
20.9    
21.1    
21.3    
21.5    
21.6    
21.8    
22.0    
22.2    
22.3    
22.5    
22.7    
22.9    
23.0    
23.2    
23.4    
23.6    
23.8    
23.9    
24.1    
24.3    
24.5    
24.6    
24.8    
25.0    
25.2    
25.4    
25.5    
25.7    
25.9    
26.1    
26.2    
26.4    
26.6    
26.8    
27.0    
27.1    
27.3    
27.5    
27.7    
27.8    
28.0    
28.2    
28.4    
28.5    
28.7    
28.9    
29.1    
29.3    
29.4    
29.6    
29.8    
30.0    
30.1    
30.3    
30.5    
30.7    
30.9    
31.0    
31.2    
31.4    
31.6    
31.7    
31.9    
32.1    
32.3    
32.4    
32.6    
32.8    
33.0    
33.2    
33.3    
33.5    
33.7    
33.9    
34.0    
34.2    
34.4    
34.6    
34.8    
34.9    
35.1    
35.3    
35.5    
35.6    
35.8    
36.0    
36.2    
36.3    
36.5    
36.7    
36.9    
37.1    
37.2    
37.4    
37.6    
37.8    
37.9    
38.1    
38.3    
38.5    
38.7    
38.8    
39.0    
39.2    
39.4    
39.5    
39.7    
39.9    
40.1    
40.2    
40.4    
40.6    
40.8    
41.0    
41.1    
41.3    
41.5    
41.7    
41.8    
42.0    
42.2    
42.4    
42.6    
42.7    
42.9    
43.1    
43.3    
43.4    
43.6    
43.8    
44.0    
44.1    
44.3    
44.5    
44.7    
44.9    
45.0    
45.2    
45.4    
45.6    
45.7    
45.9    
46.1    
46.3    
46.5    
46.6    
46.8    
47.0    
47.2    
47.3    
47.5    
47.7    
47.9    
48.0    
48.2    
48.4    
48.6    
48.8    
48.9    
49.1    
49.3    
49.5    
49.6    
49.8    
50.0    
50.2    
50.4    
50.5    
50.7    
50.9    
51.1    
51.2    
51.4    
51.6    
51.8    
52.0    
52.1    
52.3    
52.5    
52.7    
52.8    
53.0    
53.2    
53.4    
53.5    
53.7    
53.9    
54.1    
54.3    
54.4    
54.6    
54.8    
55.0    
55.1    
55.3    
55.5    
55.7    
55.9    
56.0    
56.2    
56.4    
56.6    
56.7    
56.9    
57.1    
57.3    
57.4    
57.6    
57.8    
58.0    
58.2    
58.3    
58.5    
58.7    
58.9    
59.0    
59.2    
59.4    
59.6    
59.8    
59.9    
60.1    
60.3    
60.5    
60.6    
60.8    
61.0    
61.2    
61.3    
61.5    
61.7    
61.9    
62.1    
62.2    
62.4    
62.6    
62.8    
62.9    
63.1    
63.3    
63.5    
63.7    
63.8    
64.0    
64.2    
64.4    
64.5    
64.7    
64.9    
65.1    
65.2    
65.4    
65.6    
65.8    
66.0    
66.1    
66.3    
66.5    
66.7    
66.8    
67.0    
67.2    
67.4    
67.6    
67.7    
67.9    
68.1    
68.3    
68.4    
68.6    
68.8    
69.0    
69.1    
69.3    
69.5    
69.7    
69.9    
70.0    
70.2    
70.4    
70.6    
70.7    
70.9    
71.1    
71.3    
71.5    
71.6    
71.8    
72.0    
72.2    
72.3    
72.5    
72.7    
72.9    
73.0    
73.2    
73.4    
73.6    
73.8    
73.9    
74.1    
74.3    
74.5    
74.6    
74.8    
75.0    
75.2    
75.4    
75.5    
75.7    
75.9    
76.1    
76.2    
76.4    
76.6    
76.8    
77.0    
77.1    
77.3    
77.5    
77.7    
77.8    
78.0    
78.2    
78.4    
78.5    
78.7    
78.9    
79.1    
79.3    
79.4    
79.6    
79.8    
80.0    
80.1    
80.3    
80.5    
80.7    
80.9    
81.0    
81.2    
81.4    
81.6    
81.7    
81.9    
82.1    
82.3    
82.4    
82.6    
82.8    
83.0    
83.2    
83.3    
83.5    
83.7    
83.9    
84.0    
84.2    
84.4    
84.6    
84.8    
84.9    
85.1    
85.3    
85.5    
85.6    
85.8    
86.0    
86.2    
86.3    
86.5    
86.7    
86.9    
87.1    
87.2    
87.4    
87.6    
87.8    
87.9    
88.1    
88.3    
88.5    
88.7    
88.8    
89.0    
89.2    
89.4    
89.5    
89.7    
89.9    
90.1    
90.2    
90.4    
90.6    
90.8    
91.0    
91.1    
91.3    
91.5    
91.7    
91.8    
92.0    
92.2    
92.4    
92.6    
92.7    
92.9    
93.1    
93.3    
93.4    
93.6    
93.8    
94.0    
94.1    
94.3    
94.5    
94.7    
94.9    
95.0    
95.2    
95.4    
95.6    
95.7    
95.9    
96.1    
96.3    
96.5    
96.6    
96.8    
97.0    
97.2    
97.3    
97.5    
97.7    
97.9    
98.0    
98.2    
98.4    
98.6    
98.8    
98.9    
99.1    
99.3    
99.5    
99.6    
99.8    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 15375, rend_intergenic: 14996  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33719, rend_intergenic: 25357  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37168, rend_intergenic: 36255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38318, rend_intergenic: 37725  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 39338, rend_intergenic: 38509  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107243, rend_intergenic: 104052  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135629, rend_intergenic: 127039  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140519, rend_intergenic: 135866  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159895, rend_intergenic: 153522  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165183, rend_intergenic: 160105  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 169857, rend_intergenic: 168622  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support