-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_317675-477506

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.50578_t
Valid prediction for snap_scaffold_12-snap.108-T1
Valid prediction for GlimmerHMM_glimmerT_29314-T1
Valid prediction for GeneMark_model.50590_t
Valid prediction for snap_scaffold_12-snap.88-T1
Valid prediction for GlimmerHMM_glimmerT_29315-T1
Valid prediction for snap_scaffold_12-snap.76-T1
Valid prediction for GlimmerHMM_glimmerT_29320-T1
Valid prediction for GeneMark_model.50579_t
Valid prediction for GeneMark_model.50600_t
Valid prediction for GeneMark_model.50580_t
Valid prediction for GeneMark_model.50583_t
Valid prediction for snap_scaffold_12-snap.77-T1
Valid prediction for GlimmerHMM_glimmerT_29327-T1
Valid prediction for snap_scaffold_12-snap.104-T1
Valid prediction for GeneMark_model.50591_t
Valid prediction for GeneMark_model.50602_t
Valid prediction for snap_scaffold_12-snap.106-T1
Valid prediction for GeneMark_model.50585_t
Valid prediction for GeneMark_model.50593_t
Valid prediction for snap_scaffold_12-snap.96-T1
Valid prediction for snap_scaffold_12-snap.80-T1
Valid prediction for snap_scaffold_12-snap.100-T1
Valid prediction for snap_scaffold_12-snap.107-T1
Valid prediction for GlimmerHMM_glimmerT_29318-T1
Valid prediction for GeneMark_model.50573_t
Valid prediction for snap_scaffold_12-snap.95-T1
Valid prediction for GlimmerHMM_glimmerT_29324-T1
Valid prediction for snap_scaffold_12-snap.109-T1
Valid prediction for GeneMark_model.50598_t
Valid prediction for GlimmerHMM_glimmerT_29331-T1
Valid prediction for snap_scaffold_12-snap.102-T1
Valid prediction for GlimmerHMM_glimmerT_29323-T1
Valid prediction for Augustus_model.g19563.t1
Valid prediction for GlimmerHMM_glimmerT_29332-T1
Valid prediction for GeneMark_model.50581_t
Valid prediction for GeneMark_model.50574_t
Valid prediction for GlimmerHMM_glimmerT_29319-T1
Valid prediction for snap_scaffold_12-snap.92-T1
Valid prediction for GeneMark_model.50603_t
Valid prediction for GeneMark_model.50588_t
Valid prediction for GeneMark_model.50576_t
Valid prediction for GlimmerHMM_glimmerT_29329-T1
Valid prediction for snap_scaffold_12-snap.85-T1
Valid prediction for snap_scaffold_12-snap.103-T1
Valid prediction for snap_scaffold_12-snap.94-T1
Valid prediction for snap_scaffold_12-snap.89-T1
Valid prediction for GlimmerHMM_glimmerT_29322-T1
Valid prediction for snap_scaffold_12-snap.99-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_12-snap.79-T1
Valid prediction for snap_scaffold_12-snap.84-T1
Valid prediction for snap_scaffold_12-snap.90-T1
Valid prediction for GlimmerHMM_glimmerT_29328-T1
Valid prediction for snap_scaffold_12-snap.97-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.50596_t
Valid prediction for GeneMark_model.50577_t
Valid prediction for snap_scaffold_12-snap.87-T1
Valid prediction for snap_scaffold_12-snap.78-T1
Valid prediction for snap_scaffold_12-snap.82-T1
Valid prediction for GlimmerHMM_glimmerT_29317-T1
Valid prediction for GeneMark_model.50582_t
Valid prediction for snap_scaffold_12-snap.83-T1
Valid prediction for snap_scaffold_12-snap.86-T1
Valid prediction for snap_scaffold_12-snap.93-T1
Valid prediction for GeneMark_model.50584_t
Valid prediction for GeneMark_model.50572_t
Valid prediction for snap_scaffold_12-snap.91-T1
Valid prediction for GeneMark_model.50592_t
Valid prediction for GeneMark_model.50601_t
Valid prediction for GlimmerHMM_glimmerT_29333-T1
Valid prediction for GeneMark_model.50575_t
Valid prediction for GeneMark_model.50586_t
Valid prediction for snap_scaffold_12-snap.105-T1
Valid prediction for GlimmerHMM_glimmerT_29326-T1
Valid prediction for snap_scaffold_12-snap.110-T1
Valid prediction for snap_scaffold_12-snap.101-T1
Valid prediction for Augustus_model.g19564.t1
Valid prediction for GeneMark_model.50599_t
Valid prediction for GlimmerHMM_glimmerT_29321-T1
Valid prediction for GeneMark_model.50597_t
Valid prediction for GlimmerHMM_glimmerT_29330-T1
Valid prediction for snap_scaffold_12-snap.98-T1
Valid prediction for snap_scaffold_12-snap.81-T1
Valid prediction for GlimmerHMM_glimmerT_29316-T1
Valid prediction for GeneMark_model.50589_t
Valid prediction for GeneMark_model.50594_t
Valid prediction for GeneMark_model.50587_t
Valid prediction for GlimmerHMM_glimmerT_29325-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 52488, rend_intergenic: 52485  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34096, rend_intergenic: 18256  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49139, rend_intergenic: 43361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57370, rend_intergenic: 50234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63585, rend_intergenic: 61540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67797, rend_intergenic: 66857  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83241, rend_intergenic: 82444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122416, rend_intergenic: 112758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134608, rend_intergenic: 127222  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 159832
-exon list size: 401


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.5    
1.7    
2.0    
2.2    
2.5    
2.7    
3.0    
3.2    
3.5    
3.7    
4.0    
4.2    
4.5    
4.7    
5.0    
5.2    
5.5    
5.7    
6.0    
6.2    
6.5    
6.7    
6.9    
7.2    
7.4    
7.7    
7.9    
8.2    
8.4    
8.7    
8.9    
9.2    
9.4    
9.7    
9.9    
10.2    
10.4    
10.7    
10.9    
11.2    
11.4    
11.7    
11.9    
12.2    
12.4    
12.7    
12.9    
13.2    
13.4    
13.6    
13.9    
14.1    
14.4    
14.6    
14.9    
15.1    
15.4    
15.6    
15.9    
16.1    
16.4    
16.6    
16.9    
17.1    
17.4    
17.6    
17.9    
18.1    
18.4    
18.6    
18.9    
19.1    
19.4    
19.6    
19.9    
20.1    
20.3    
20.6    
20.8    
21.1    
21.3    
21.6    
21.8    
22.1    
22.3    
22.6    
22.8    
23.1    
23.3    
23.6    
23.8    
24.1    
24.3    
24.6    
24.8    
25.1    
25.3    
25.6    
25.8    
26.1    
26.3    
26.6    
26.8    
27.0    
27.3    
27.5    
27.8    
28.0    
28.3    
28.5    
28.8    
29.0    
29.3    
29.5    
29.8    
30.0    
30.3    
30.5    
30.8    
31.0    
31.3    
31.5    
31.8    
32.0    
32.3    
32.5    
32.8    
33.0    
33.3    
33.5    
33.7    
34.0    
34.2    
34.5    
34.7    
35.0    
35.2    
35.5    
35.7    
36.0    
36.2    
36.5    
36.7    
37.0    
37.2    
37.5    
37.7    
38.0    
38.2    
38.5    
38.7    
39.0    
39.2    
39.5    
39.7    
40.0    
40.2    
40.4    
40.7    
40.9    
41.2    
41.4    
41.7    
41.9    
42.2    
42.4    
42.7    
42.9    
43.2    
43.4    
43.7    
43.9    
44.2    
44.4    
44.7    
44.9    
45.2    
45.4    
45.7    
45.9    
46.2    
46.4    
46.7    
46.9    
47.1    
47.4    
47.6    
47.9    
48.1    
48.4    
48.6    
48.9    
49.1    
49.4    
49.6    
49.9    
50.1    
50.4    
50.6    
50.9    
51.1    
51.4    
51.6    
51.9    
52.1    
52.4    
52.6    
52.9    
53.1    
53.3    
53.6    
53.8    
54.1    
54.3    
54.6    
54.8    
55.1    
55.3    
55.6    
55.8    
56.1    
56.3    
56.6    
56.8    
57.1    
57.3    
57.6    
57.8    
58.1    
58.3    
58.6    
58.8    
59.1    
59.3    
59.6    
59.8    
60.0    
60.3    
60.5    
60.8    
61.0    
61.3    
61.5    
61.8    
62.0    
62.3    
62.5    
62.8    
63.0    
63.3    
63.5    
63.8    
64.0    
64.3    
64.5    
64.8    
65.0    
65.3    
65.5    
65.8    
66.0    
66.3    
66.5    
66.7    
67.0    
67.2    
67.5    
67.7    
68.0    
68.2    
68.5    
68.7    
69.0    
69.2    
69.5    
69.7    
70.0    
70.2    
70.5    
70.7    
71.0    
71.2    
71.5    
71.7    
72.0    
72.2    
72.5    
72.7    
73.0    
73.2    
73.4    
73.7    
73.9    
74.2    
74.4    
74.7    
74.9    
75.2    
75.4    
75.7    
75.9    
76.2    
76.4    
76.7    
76.9    
77.2    
77.4    
77.7    
77.9    
78.2    
78.4    
78.7    
78.9    
79.2    
79.4    
79.7    
79.9    
80.1    
80.4    
80.6    
80.9    
81.1    
81.4    
81.6    
81.9    
82.1    
82.4    
82.6    
82.9    
83.1    
83.4    
83.6    
83.9    
84.1    
84.4    
84.6    
84.9    
85.1    
85.4    
85.6    
85.9    
86.1    
86.4    
86.6    
86.8    
87.1    
87.3    
87.6    
87.8    
88.1    
88.3    
88.6    
88.8    
89.1    
89.3    
89.6    
89.8    
90.1    
90.3    
90.6    
90.8    
91.1    
91.3    
91.6    
91.8    
92.1    
92.3    
92.6    
92.8    
93.1    
93.3    
93.5    
93.8    
94.0    
94.3    
94.5    
94.8    
95.0    
95.3    
95.5    
95.8    
96.0    
96.3    
96.5    
96.8    
97.0    
97.3    
97.5    
97.8    
98.0    
98.3    
98.5    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 20 predictions from path traversal
Error with prediction: GlimmerHMM lend_intergenic: 52488, rend_intergenic: 52485  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34096, rend_intergenic: 18256  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49139, rend_intergenic: 43361  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57370, rend_intergenic: 50234  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63585, rend_intergenic: 61540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67797, rend_intergenic: 66857  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83241, rend_intergenic: 82444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122416, rend_intergenic: 112758  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134608, rend_intergenic: 127222  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support