-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_15910439-16080230

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g20944.t1
Valid prediction for Augustus_model.g20940.t1
Valid prediction for GeneMark_model.54214_t
Valid prediction for GeneMark_model.54215_t
Valid prediction for GlimmerHMM_glimmerT_31415-T1
Valid prediction for snap_scaffold_12-snap.3100-T1
Valid prediction for snap_scaffold_12-snap.3091-T1
Valid prediction for GeneMark_model.54218_t
Valid prediction for GlimmerHMM_glimmerT_31407-T1
Valid prediction for GlimmerHMM_glimmerT_31409-T1
Valid prediction for GlimmerHMM_glimmerT_31420-T1
Valid prediction for snap_scaffold_12-snap.3096-T1
Valid prediction for GlimmerHMM_glimmerT_31419-T1
Valid prediction for Augustus_model.g20949.t1
Valid prediction for Augustus_model.g20954.t1
Valid prediction for snap_scaffold_12-snap.3087-T1
Valid prediction for GeneMark_model.54206_t
Valid prediction for GlimmerHMM_glimmerT_31410-T1
Valid prediction for GlimmerHMM_glimmerT_31421-T1
Valid prediction for GlimmerHMM_glimmerT_31406-T1
Valid prediction for Augustus_model.g20939.t1
Valid prediction for snap_scaffold_12-snap.3089-T1
Valid prediction for Augustus_model.g20946.t1
Valid prediction for Augustus_model.g20933.t1
Valid prediction for GeneMark_model.54227_t
Valid prediction for GeneMark_model.54226_t
Valid prediction for snap_scaffold_12-snap.3079-T1
Valid prediction for Augustus_model.g20942.t1
Valid prediction for GlimmerHMM_glimmerT_31423-T1
Valid prediction for GeneMark_model.54209_t
Valid prediction for GeneMark_model.54221_t
Valid prediction for GeneMark_model.54230_t
Valid prediction for Augustus_model.g20950.t1
Valid prediction for GeneMark_model.54201_t
Valid prediction for Augustus_model.g20943.t1
Valid prediction for GlimmerHMM_glimmerT_31418-T1
Valid prediction for GeneMark_model.54207_t
Valid prediction for Augustus_model.g20953.t1
Valid prediction for GlimmerHMM_glimmerT_31424-T1
Valid prediction for GeneMark_model.54225_t
Valid prediction for GeneMark_model.54217_t
Valid prediction for snap_scaffold_12-snap.3099-T1
Valid prediction for snap_scaffold_12-snap.3088-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GeneMark_model.54216_t
Valid prediction for snap_scaffold_12-snap.3092-T1
Valid prediction for snap_scaffold_12-snap.3109-T1
Valid prediction for GlimmerHMM_glimmerT_31416-T1
Valid prediction for snap_scaffold_12-snap.3107-T1
Valid prediction for snap_scaffold_12-snap.3094-T1
Valid prediction for GeneMark_model.54211_t
Valid prediction for GeneMark_model.54210_t
Valid prediction for GlimmerHMM_glimmerT_31412-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g20935.t1
Valid prediction for GlimmerHMM_glimmerT_31399-T1
Valid prediction for Augustus_model.g20945.t1
Valid prediction for GlimmerHMM_glimmerT_31408-T1
Valid prediction for GeneMark_model.54200_t
Valid prediction for GeneMark_model.54224_t
Valid prediction for Augustus_model.g20941.t1
Valid prediction for snap_scaffold_12-snap.3105-T1
Valid prediction for GeneMark_model.54199_t
Valid prediction for GlimmerHMM_glimmerT_31413-T1
Valid prediction for GlimmerHMM_glimmerT_31414-T1
Valid prediction for GeneMark_model.54228_t
Valid prediction for snap_scaffold_12-snap.3098-T1
Valid prediction for snap_scaffold_12-snap.3104-T1
Valid prediction for Augustus_model.g20937.t1
Valid prediction for snap_scaffold_12-snap.3082-T1
Valid prediction for Augustus_model.g20947.t1
Valid prediction for snap_scaffold_12-snap.3086-T1
Valid prediction for snap_scaffold_12-snap.3095-T1
Valid prediction for GeneMark_model.54213_t
Valid prediction for GeneMark_model.54223_t
Valid prediction for GlimmerHMM_glimmerT_31400-T1
Valid prediction for snap_scaffold_12-snap.3101-T1
Valid prediction for Augustus_model.g20934.t1
Valid prediction for snap_scaffold_12-snap.3103-T1
Valid prediction for snap_scaffold_12-snap.3106-T1
Valid prediction for GlimmerHMM_glimmerT_31402-T1
Valid prediction for GlimmerHMM_glimmerT_31411-T1
Valid prediction for GlimmerHMM_glimmerT_31404-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_12-snap.3102-T1
Valid prediction for GeneMark_model.54212_t
Valid prediction for GlimmerHMM_glimmerT_31422-T1
Valid prediction for snap_scaffold_12-snap.3108-T1
Valid prediction for GeneMark_model.54204_t
Valid prediction for GeneMark_model.54202_t
Valid prediction for snap_scaffold_12-snap.3084-T1
Valid prediction for GlimmerHMM_glimmerT_31405-T1
Valid prediction for Augustus_model.g20952.t1
Valid prediction for GeneMark_model.54205_t
Valid prediction for Augustus_model.g20936.t1
Valid prediction for GeneMark_model.54219_t
Valid prediction for GlimmerHMM_glimmerT_31398-T1
Valid prediction for GeneMark_model.54203_t
Valid prediction for snap_scaffold_12-snap.3080-T1
Valid prediction for Augustus_model.g20951.t1
Valid prediction for snap_scaffold_12-snap.3083-T1
Valid prediction for Augustus_model.g20948.t1
Valid prediction for snap_scaffold_12-snap.3097-T1
Valid prediction for GeneMark_model.54229_t
Valid prediction for GeneMark_model.54198_t
Valid prediction for GlimmerHMM_glimmerT_31401-T1
Valid prediction for GeneMark_model.54220_t
Valid prediction for snap_scaffold_12-snap.3081-T1
Valid prediction for Augustus_model.g20938.t1
Valid prediction for GlimmerHMM_glimmerT_31403-T1
Valid prediction for snap_scaffold_12-snap.3093-T1
Valid prediction for snap_scaffold_12-snap.3090-T1
Valid prediction for GlimmerHMM_glimmerT_31417-T1
Valid prediction for GeneMark_model.54222_t
Valid prediction for snap_scaffold_12-snap.3085-T1
Valid prediction for GeneMark_model.54208_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 155117, rend_intergenic: 153786  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165019, rend_intergenic: 159043  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 169792
-exon list size: 359


building trellis

0.3    
0.6    
0.8    
1.1    
1.4    
1.7    
1.9    
2.2    
2.5    
2.8    
3.0    
3.3    
3.6    
3.9    
4.2    
4.4    
4.7    
5.0    
5.3    
5.5    
5.8    
6.1    
6.4    
6.6    
6.9    
7.2    
7.5    
7.8    
8.0    
8.3    
8.6    
8.9    
9.1    
9.4    
9.7    
10.0    
10.2    
10.5    
10.8    
11.1    
11.4    
11.6    
11.9    
12.2    
12.5    
12.7    
13.0    
13.3    
13.6    
13.9    
14.1    
14.4    
14.7    
15.0    
15.2    
15.5    
15.8    
16.1    
16.3    
16.6    
16.9    
17.2    
17.5    
17.7    
18.0    
18.3    
18.6    
18.8    
19.1    
19.4    
19.7    
19.9    
20.2    
20.5    
20.8    
21.1    
21.3    
21.6    
21.9    
22.2    
22.4    
22.7    
23.0    
23.3    
23.5    
23.8    
24.1    
24.4    
24.7    
24.9    
25.2    
25.5    
25.8    
26.0    
26.3    
26.6    
26.9    
27.1    
27.4    
27.7    
28.0    
28.3    
28.5    
28.8    
29.1    
29.4    
29.6    
29.9    
30.2    
30.5    
30.7    
31.0    
31.3    
31.6    
31.9    
32.1    
32.4    
32.7    
33.0    
33.2    
33.5    
33.8    
34.1    
34.3    
34.6    
34.9    
35.2    
35.5    
35.7    
36.0    
36.3    
36.6    
36.8    
37.1    
37.4    
37.7    
38.0    
38.2    
38.5    
38.8    
39.1    
39.3    
39.6    
39.9    
40.2    
40.4    
40.7    
41.0    
41.3    
41.6    
41.8    
42.1    
42.4    
42.7    
42.9    
43.2    
43.5    
43.8    
44.0    
44.3    
44.6    
44.9    
45.2    
45.4    
45.7    
46.0    
46.3    
46.5    
46.8    
47.1    
47.4    
47.6    
47.9    
48.2    
48.5    
48.8    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.2    
51.5    
51.8    
52.1    
52.4    
52.6    
52.9    
53.2    
53.5    
53.7    
54.0    
54.3    
54.6    
54.8    
55.1    
55.4    
55.7    
56.0    
56.2    
56.5    
56.8    
57.1    
57.3    
57.6    
57.9    
58.2    
58.4    
58.7    
59.0    
59.3    
59.6    
59.8    
60.1    
60.4    
60.7    
60.9    
61.2    
61.5    
61.8    
62.0    
62.3    
62.6    
62.9    
63.2    
63.4    
63.7    
64.0    
64.3    
64.5    
64.8    
65.1    
65.4    
65.7    
65.9    
66.2    
66.5    
66.8    
67.0    
67.3    
67.6    
67.9    
68.1    
68.4    
68.7    
69.0    
69.3    
69.5    
69.8    
70.1    
70.4    
70.6    
70.9    
71.2    
71.5    
71.7    
72.0    
72.3    
72.6    
72.9    
73.1    
73.4    
73.7    
74.0    
74.2    
74.5    
74.8    
75.1    
75.3    
75.6    
75.9    
76.2    
76.5    
76.7    
77.0    
77.3    
77.6    
77.8    
78.1    
78.4    
78.7    
78.9    
79.2    
79.5    
79.8    
80.1    
80.3    
80.6    
80.9    
81.2    
81.4    
81.7    
82.0    
82.3    
82.5    
82.8    
83.1    
83.4    
83.7    
83.9    
84.2    
84.5    
84.8    
85.0    
85.3    
85.6    
85.9    
86.1    
86.4    
86.7    
87.0    
87.3    
87.5    
87.8    
88.1    
88.4    
88.6    
88.9    
89.2    
89.5    
89.8    
90.0    
90.3    
90.6    
90.9    
91.1    
91.4    
91.7    
92.0    
92.2    
92.5    
92.8    
93.1    
93.4    
93.6    
93.9    
94.2    
94.5    
94.7    
95.0    
95.3    
95.6    
95.8    
96.1    
96.4    
96.7    
97.0    
97.2    
97.5    
97.8    
98.1    
98.3    
98.6    
98.9    
99.2    
99.4    
99.7    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 155117, rend_intergenic: 153786  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165019, rend_intergenic: 159043  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 13950
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support