-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_153390-320694

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_12-snap.53-T1
Valid prediction for Augustus_model.g19562.t1
Valid prediction for snap_scaffold_12-snap.47-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_12-snap.45-T1
Valid prediction for GeneMark_model.50544_t
Valid prediction for snap_scaffold_12-snap.68-T1
Valid prediction for snap_scaffold_12-snap.37-T1
Valid prediction for snap_scaffold_12-snap.66-T1
Valid prediction for GeneMark_model.50567_t
Valid prediction for snap_scaffold_12-snap.61-T1
Valid prediction for GeneMark_model.50542_t
Valid prediction for snap_scaffold_12-snap.42-T1
Valid prediction for GeneMark_model.50533_t
Valid prediction for GlimmerHMM_glimmerT_29310-T1
Valid prediction for GlimmerHMM_glimmerT_29286-T1
Valid prediction for GlimmerHMM_glimmerT_29297-T1
Valid prediction for GeneMark_model.50561_t
Valid prediction for GeneMark_model.50562_t
Valid prediction for snap_scaffold_12-snap.55-T1
Valid prediction for GeneMark_model.50556_t
Valid prediction for snap_scaffold_12-snap.58-T1
Valid prediction for GlimmerHMM_glimmerT_29288-T1
Valid prediction for GeneMark_model.50535_t
Valid prediction for snap_scaffold_12-snap.40-T1
Valid prediction for GeneMark_model.50570_t
Valid prediction for snap_scaffold_12-snap.60-T1
Valid prediction for snap_scaffold_12-snap.41-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_29311-T1
Valid prediction for GeneMark_model.50534_t
Valid prediction for GeneMark_model.50546_t
Valid prediction for GlimmerHMM_glimmerT_29306-T1
Valid prediction for GeneMark_model.50540_t
Valid prediction for snap_scaffold_12-snap.63-T1
Valid prediction for GlimmerHMM_glimmerT_29292-T1
Valid prediction for snap_scaffold_12-snap.70-T1
Valid prediction for GeneMark_model.50536_t
Valid prediction for GlimmerHMM_glimmerT_29307-T1
Valid prediction for snap_scaffold_12-snap.44-T1
Valid prediction for GeneMark_model.50563_t
Valid prediction for GeneMark_model.50548_t
Valid prediction for snap_scaffold_12-snap.36-T1
Valid prediction for snap_scaffold_12-snap.72-T1
Valid prediction for GlimmerHMM_glimmerT_29285-T1
Valid prediction for snap_scaffold_12-snap.71-T1
Valid prediction for GlimmerHMM_glimmerT_29296-T1
Valid prediction for GeneMark_model.50552_t
Valid prediction for GlimmerHMM_glimmerT_29304-T1
Valid prediction for GeneMark_model.50559_t
Valid prediction for snap_scaffold_12-snap.69-T1
Valid prediction for snap_scaffold_12-snap.74-T1
Valid prediction for snap_scaffold_12-snap.64-T1
Valid prediction for snap_scaffold_12-snap.38-T1
Valid prediction for GlimmerHMM_glimmerT_29284-T1
Valid prediction for GeneMark_model.50538_t
Valid prediction for GeneMark_model.50569_t
Valid prediction for GeneMark_model.50550_t
Valid prediction for snap_scaffold_12-snap.51-T1
Valid prediction for pasa_asmbl_8408.p1
Valid prediction for GlimmerHMM_glimmerT_29290-T1
Valid prediction for snap_scaffold_12-snap.54-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g19559.t1
Valid prediction for GeneMark_model.50553_t
Valid prediction for GeneMark_model.50554_t
Valid prediction for snap_scaffold_12-snap.56-T1
Valid prediction for GlimmerHMM_glimmerT_29303-T1
Valid prediction for snap_scaffold_12-snap.62-T1
Valid prediction for GeneMark_model.50551_t
Valid prediction for GeneMark_model.50543_t
Valid prediction for GlimmerHMM_glimmerT_29305-T1
Valid prediction for GeneMark_model.50568_t
Valid prediction for Augustus_model.g19558.t1
Valid prediction for GlimmerHMM_glimmerT_29313-T1
Valid prediction for snap_scaffold_12-snap.50-T1
Valid prediction for GlimmerHMM_glimmerT_29287-T1
Valid prediction for Augustus_model.g19560.t1
Valid prediction for GlimmerHMM_glimmerT_29308-T1
Valid prediction for Augustus_model.g19556.t1
Valid prediction for GlimmerHMM_glimmerT_29295-T1
Valid prediction for snap_scaffold_12-snap.57-T1
Valid prediction for GlimmerHMM_glimmerT_29289-T1
Valid prediction for GeneMark_model.50565_t
Valid prediction for GlimmerHMM_glimmerT_29301-T1
Valid prediction for GeneMark_model.50564_t
Valid prediction for Augustus_model.g19557.t1
Valid prediction for GeneMark_model.50539_t
Valid prediction for GeneMark_model.50549_t
Valid prediction for GeneMark_model.50571_t
Valid prediction for pasa_asmbl_7415.p1
Valid prediction for GlimmerHMM_glimmerT_29312-T1
Valid prediction for Augustus_model.g19561.t1
Valid prediction for GlimmerHMM_glimmerT_29302-T1
Valid prediction for GeneMark_model.50558_t
Valid prediction for GlimmerHMM_glimmerT_29300-T1
Valid prediction for GlimmerHMM_glimmerT_29293-T1
Valid prediction for GeneMark_model.50541_t
Valid prediction for snap_scaffold_12-snap.75-T1
Valid prediction for snap_scaffold_12-snap.48-T1
Valid prediction for GlimmerHMM_glimmerT_29309-T1
Valid prediction for GeneMark_model.50547_t
Valid prediction for snap_scaffold_12-snap.39-T1
Valid prediction for snap_scaffold_12-snap.49-T1
Valid prediction for GeneMark_model.50537_t
Valid prediction for snap_scaffold_12-snap.65-T1
Valid prediction for Augustus_model.g19554.t1
Valid prediction for snap_scaffold_12-snap.67-T1
Valid prediction for GlimmerHMM_glimmerT_29298-T1
Valid prediction for GlimmerHMM_glimmerT_29299-T1
Valid prediction for Augustus_model.g19555.t1
Valid prediction for GeneMark_model.50566_t
Valid prediction for GlimmerHMM_glimmerT_29294-T1
Valid prediction for snap_scaffold_12-snap.52-T1
Valid prediction for GeneMark_model.50560_t
Valid prediction for snap_scaffold_12-snap.43-T1
Valid prediction for GeneMark_model.50555_t
Valid prediction for snap_scaffold_12-snap.59-T1
Valid prediction for snap_scaffold_12-snap.46-T1
Valid prediction for GeneMark_model.50545_t
Valid prediction for GlimmerHMM_glimmerT_29291-T1
Valid prediction for snap_scaffold_12-snap.73-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 23682, rend_intergenic: 15803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27889, rend_intergenic: 24443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31702, rend_intergenic: 28313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46698, rend_intergenic: 41495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49516, rend_intergenic: 46929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66423, rend_intergenic: 66087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69881, rend_intergenic: 66967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87960, rend_intergenic: 84112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96644, rend_intergenic: 88943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131770, rend_intergenic: 129471  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134414, rend_intergenic: 133176  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164285, rend_intergenic: 161864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 167305
-exon list size: 532


building trellis

0.2    
0.4    
0.6    
0.7    
0.9    
1.1    
1.3    
1.5    
1.7    
1.9    
2.1    
2.2    
2.4    
2.6    
2.8    
3.0    
3.2    
3.4    
3.6    
3.7    
3.9    
4.1    
4.3    
4.5    
4.7    
4.9    
5.1    
5.2    
5.4    
5.6    
5.8    
6.0    
6.2    
6.4    
6.6    
6.7    
6.9    
7.1    
7.3    
7.5    
7.7    
7.9    
8.1    
8.2    
8.4    
8.6    
8.8    
9.0    
9.2    
9.4    
9.6    
9.7    
9.9    
10.1    
10.3    
10.5    
10.7    
10.9    
11.0    
11.2    
11.4    
11.6    
11.8    
12.0    
12.2    
12.4    
12.5    
12.7    
12.9    
13.1    
13.3    
13.5    
13.7    
13.9    
14.0    
14.2    
14.4    
14.6    
14.8    
15.0    
15.2    
15.4    
15.5    
15.7    
15.9    
16.1    
16.3    
16.5    
16.7    
16.9    
17.0    
17.2    
17.4    
17.6    
17.8    
18.0    
18.2    
18.4    
18.5    
18.7    
18.9    
19.1    
19.3    
19.5    
19.7    
19.9    
20.0    
20.2    
20.4    
20.6    
20.8    
21.0    
21.2    
21.3    
21.5    
21.7    
21.9    
22.1    
22.3    
22.5    
22.7    
22.8    
23.0    
23.2    
23.4    
23.6    
23.8    
24.0    
24.2    
24.3    
24.5    
24.7    
24.9    
25.1    
25.3    
25.5    
25.7    
25.8    
26.0    
26.2    
26.4    
26.6    
26.8    
27.0    
27.2    
27.3    
27.5    
27.7    
27.9    
28.1    
28.3    
28.5    
28.7    
28.8    
29.0    
29.2    
29.4    
29.6    
29.8    
30.0    
30.1    
30.3    
30.5    
30.7    
30.9    
31.1    
31.3    
31.5    
31.6    
31.8    
32.0    
32.2    
32.4    
32.6    
32.8    
33.0    
33.1    
33.3    
33.5    
33.7    
33.9    
34.1    
34.3    
34.5    
34.6    
34.8    
35.0    
35.2    
35.4    
35.6    
35.8    
36.0    
36.1    
36.3    
36.5    
36.7    
36.9    
37.1    
37.3    
37.5    
37.6    
37.8    
38.0    
38.2    
38.4    
38.6    
38.8    
39.0    
39.1    
39.3    
39.5    
39.7    
39.9    
40.1    
40.3    
40.4    
40.6    
40.8    
41.0    
41.2    
41.4    
41.6    
41.8    
41.9    
42.1    
42.3    
42.5    
42.7    
42.9    
43.1    
43.3    
43.4    
43.6    
43.8    
44.0    
44.2    
44.4    
44.6    
44.8    
44.9    
45.1    
45.3    
45.5    
45.7    
45.9    
46.1    
46.3    
46.4    
46.6    
46.8    
47.0    
47.2    
47.4    
47.6    
47.8    
47.9    
48.1    
48.3    
48.5    
48.7    
48.9    
49.1    
49.3    
49.4    
49.6    
49.8    
50.0    
50.2    
50.4    
50.6    
50.7    
50.9    
51.1    
51.3    
51.5    
51.7    
51.9    
52.1    
52.2    
52.4    
52.6    
52.8    
53.0    
53.2    
53.4    
53.6    
53.7    
53.9    
54.1    
54.3    
54.5    
54.7    
54.9    
55.1    
55.2    
55.4    
55.6    
55.8    
56.0    
56.2    
56.4    
56.6    
56.7    
56.9    
57.1    
57.3    
57.5    
57.7    
57.9    
58.1    
58.2    
58.4    
58.6    
58.8    
59.0    
59.2    
59.4    
59.6    
59.7    
59.9    
60.1    
60.3    
60.5    
60.7    
60.9    
61.0    
61.2    
61.4    
61.6    
61.8    
62.0    
62.2    
62.4    
62.5    
62.7    
62.9    
63.1    
63.3    
63.5    
63.7    
63.9    
64.0    
64.2    
64.4    
64.6    
64.8    
65.0    
65.2    
65.4    
65.5    
65.7    
65.9    
66.1    
66.3    
66.5    
66.7    
66.9    
67.0    
67.2    
67.4    
67.6    
67.8    
68.0    
68.2    
68.4    
68.5    
68.7    
68.9    
69.1    
69.3    
69.5    
69.7    
69.9    
70.0    
70.2    
70.4    
70.6    
70.8    
71.0    
71.2    
71.3    
71.5    
71.7    
71.9    
72.1    
72.3    
72.5    
72.7    
72.8    
73.0    
73.2    
73.4    
73.6    
73.8    
74.0    
74.2    
74.3    
74.5    
74.7    
74.9    
75.1    
75.3    
75.5    
75.7    
75.8    
76.0    
76.2    
76.4    
76.6    
76.8    
77.0    
77.2    
77.3    
77.5    
77.7    
77.9    
78.1    
78.3    
78.5    
78.7    
78.8    
79.0    
79.2    
79.4    
79.6    
79.8    
80.0    
80.1    
80.3    
80.5    
80.7    
80.9    
81.1    
81.3    
81.5    
81.6    
81.8    
82.0    
82.2    
82.4    
82.6    
82.8    
83.0    
83.1    
83.3    
83.5    
83.7    
83.9    
84.1    
84.3    
84.5    
84.6    
84.8    
85.0    
85.2    
85.4    
85.6    
85.8    
86.0    
86.1    
86.3    
86.5    
86.7    
86.9    
87.1    
87.3    
87.5    
87.6    
87.8    
88.0    
88.2    
88.4    
88.6    
88.8    
89.0    
89.1    
89.3    
89.5    
89.7    
89.9    
90.1    
90.3    
90.4    
90.6    
90.8    
91.0    
91.2    
91.4    
91.6    
91.8    
91.9    
92.1    
92.3    
92.5    
92.7    
92.9    
93.1    
93.3    
93.4    
93.6    
93.8    
94.0    
94.2    
94.4    
94.6    
94.8    
94.9    
95.1    
95.3    
95.5    
95.7    
95.9    
96.1    
96.3    
96.4    
96.6    
96.8    
97.0    
97.2    
97.4    
97.6    
97.8    
97.9    
98.1    
98.3    
98.5    
98.7    
98.9    
99.1    
99.3    
99.4    
99.6    
99.8    
-found 34 predictions from path traversal
Error with prediction: snap lend_intergenic: 23682, rend_intergenic: 15803  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 27889, rend_intergenic: 24443  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31702, rend_intergenic: 28313  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 46698, rend_intergenic: 41495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49516, rend_intergenic: 46929  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66423, rend_intergenic: 66087  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69881, rend_intergenic: 66967  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 87960, rend_intergenic: 84112  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96644, rend_intergenic: 88943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 131770, rend_intergenic: 129471  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134414, rend_intergenic: 133176  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164285, rend_intergenic: 161864  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support