-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_14776647-14903427

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_12-snap.2831-T1
Valid prediction for GlimmerHMM_glimmerT_31224-T1
Valid prediction for GlimmerHMM_glimmerT_31218-T1
Valid prediction for snap_scaffold_12-snap.2842-T1
Valid prediction for GlimmerHMM_glimmerT_31230-T1
Valid prediction for GeneMark_model.53915_t
Valid prediction for snap_scaffold_12-snap.2826-T1
Valid prediction for GeneMark_model.53948_t
Valid prediction for GeneMark_model.53950_t
Valid prediction for Augustus_model.g20813.t1
Valid prediction for HiQ_model.g20819.t1
Valid prediction for snap_scaffold_12-snap.2850-T1
Valid prediction for GeneMark_model.53940_t
Valid prediction for GeneMark_model.53936_t
Valid prediction for snap_scaffold_12-snap.2820-T1
Valid prediction for GlimmerHMM_glimmerT_31239-T1
Valid prediction for snap_scaffold_12-snap.2846-T1
Valid prediction for snap_scaffold_12-snap.2837-T1
Valid prediction for GeneMark_model.53943_t
Valid prediction for snap_scaffold_12-snap.2832-T1
Valid prediction for GlimmerHMM_glimmerT_31222-T1
Valid prediction for GlimmerHMM_glimmerT_31226-T1
Valid prediction for snap_scaffold_12-snap.2824-T1
Valid prediction for GeneMark_model.53919_t
Valid prediction for snap_scaffold_12-snap.2841-T1
Valid prediction for GeneMark_model.53933_t
Valid prediction for GeneMark_model.53923_t
Valid prediction for GeneMark_model.53935_t
Valid prediction for GlimmerHMM_glimmerT_31234-T1
Valid prediction for GlimmerHMM_glimmerT_31240-T1
Valid prediction for Augustus_model.g20814.t1
Valid prediction for GeneMark_model.53945_t
Valid prediction for snap_scaffold_12-snap.2844-T1
Valid prediction for snap_scaffold_12-snap.2835-T1
Valid prediction for Augustus_model.g20821.t1
Valid prediction for GeneMark_model.53924_t
Valid prediction for GeneMark_model.53941_t
Valid prediction for GeneMark_model.53932_t
Valid prediction for snap_scaffold_12-snap.2830-T1
Valid prediction for GlimmerHMM_glimmerT_31237-T1
Valid prediction for GeneMark_model.53954_t
Valid prediction for snap_scaffold_12-snap.2848-T1
Valid prediction for GeneMark_model.53917_t
Valid prediction for pasa_asmbl_9058.p1
Valid prediction for GeneMark_model.53911_t
Valid prediction for GeneMark_model.53913_t
Valid prediction for GlimmerHMM_glimmerT_31220-T1
Valid prediction for GeneMark_model.53938_t
Valid prediction for GeneMark_model.53921_t
Valid prediction for GeneMark_model.53927_t
Valid prediction for GeneMark_model.53928_t
Valid prediction for snap_scaffold_12-snap.2833-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.2822-T1
Valid prediction for GeneMark_model.53944_t
Valid prediction for GlimmerHMM_glimmerT_31231-T1
Valid prediction for GlimmerHMM_glimmerT_31235-T1
Valid prediction for GlimmerHMM_glimmerT_31225-T1
Valid prediction for GeneMark_model.53929_t
Valid prediction for GeneMark_model.53922_t
Valid prediction for snap_scaffold_12-snap.2843-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GeneMark_model.53920_t
Valid prediction for pasa_asmbl_8143.p1
Valid prediction for GlimmerHMM_glimmerT_31233-T1
Valid prediction for GeneMark_model.53925_t
Valid prediction for snap_scaffold_12-snap.2827-T1
Valid prediction for snap_scaffold_12-snap.2839-T1
Valid prediction for snap_scaffold_12-snap.2849-T1
Valid prediction for snap_scaffold_12-snap.2828-T1
Valid prediction for GeneMark_model.53910_t
Valid prediction for snap_scaffold_12-snap.2847-T1
Valid prediction for HiQ_model.g20822.t1
Valid prediction for GeneMark_model.53953_t
Valid prediction for snap_scaffold_12-snap.2836-T1
Valid prediction for GeneMark_model.53951_t
Valid prediction for snap_scaffold_12-snap.2840-T1
Valid prediction for GlimmerHMM_glimmerT_31223-T1
Valid prediction for GlimmerHMM_glimmerT_31229-T1
Valid prediction for GeneMark_model.53939_t
Valid prediction for Augustus_model.g20817.t1
Valid prediction for GlimmerHMM_glimmerT_31232-T1
Valid prediction for GlimmerHMM_glimmerT_31227-T1
Valid prediction for GeneMark_model.53949_t
Valid prediction for GlimmerHMM_glimmerT_31221-T1
Valid prediction for GeneMark_model.53931_t
Valid prediction for CodingQuarry_transcript_10440-T1
Valid prediction for Augustus_model.g20820.t1
Valid prediction for GeneMark_model.53937_t
Valid prediction for snap_scaffold_12-snap.2834-T1
Valid prediction for HiQ_model.g20818.t1
Valid prediction for GlimmerHMM_glimmerT_31236-T1
Valid prediction for snap_scaffold_12-snap.2821-T1
Valid prediction for GeneMark_model.53916_t
Valid prediction for GeneMark_model.53946_t
Valid prediction for GlimmerHMM_glimmerT_31219-T1
Valid prediction for GeneMark_model.53942_t
Valid prediction for snap_scaffold_12-snap.2825-T1
Valid prediction for Augustus_model.g20815.t1
Valid prediction for GeneMark_model.53947_t
Valid prediction for snap_scaffold_12-snap.2845-T1
Valid prediction for GeneMark_model.53930_t
Valid prediction for GlimmerHMM_glimmerT_31241-T1
Valid prediction for GeneMark_model.53934_t
Valid prediction for CodingQuarry_transcript_10441-T1
Valid prediction for GeneMark_model.53955_t
Valid prediction for Augustus_model.g20816.t1
Valid prediction for GlimmerHMM_glimmerT_31238-T1
Valid prediction for snap_scaffold_12-snap.2838-T1
Valid prediction for GlimmerHMM_glimmerT_31228-T1
Valid prediction for snap_scaffold_12-snap.2829-T1
Valid prediction for pasa_asmbl_8141.p1
Valid prediction for GeneMark_model.53926_t
Valid prediction for GeneMark_model.53918_t
Valid prediction for Augustus_model.g20812.t1
Valid prediction for snap_scaffold_12-snap.2823-T1
Valid prediction for GeneMark_model.53912_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 16104, rend_intergenic: 11497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40367, rend_intergenic: 30968  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53254, rend_intergenic: 46309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68270, rend_intergenic: 67108  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81000, rend_intergenic: 71860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98945, rend_intergenic: 92324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126312, rend_intergenic: 121461  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 126781
-exon list size: 480


building trellis

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99.8    
-found 36 predictions from path traversal
Error with prediction: snap lend_intergenic: 16104, rend_intergenic: 11497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40367, rend_intergenic: 30968  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53254, rend_intergenic: 46309  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68270, rend_intergenic: 67108  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81000, rend_intergenic: 71860  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98945, rend_intergenic: 92324  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 126312, rend_intergenic: 121461  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support