-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_1470154-1712270

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_29483-T1
Valid prediction for snap_scaffold_12-snap.348-T1
Valid prediction for snap_scaffold_12-snap.359-T1
Valid prediction for GeneMark_model.50885_t
Valid prediction for snap_scaffold_12-snap.344-T1
Valid prediction for GlimmerHMM_glimmerT_29494-T1
Valid prediction for GeneMark_model.50922_t
Valid prediction for GeneMark_model.50899_t
Valid prediction for GlimmerHMM_glimmerT_29481-T1
Valid prediction for snap_scaffold_12-snap.351-T1
Valid prediction for GeneMark_model.50911_t
Valid prediction for GeneMark_model.50896_t
Valid prediction for snap_scaffold_12-snap.339-T1
Valid prediction for GlimmerHMM_glimmerT_29497-T1
Valid prediction for snap_scaffold_12-snap.357-T1
Valid prediction for GeneMark_model.50915_t
Valid prediction for snap_scaffold_12-snap.354-T1
Valid prediction for snap_scaffold_12-snap.343-T1
Valid prediction for GeneMark_model.50924_t
Valid prediction for Augustus_model.g19621.t1
Valid prediction for GeneMark_model.50888_t
Valid prediction for GeneMark_model.50905_t
Valid prediction for GeneMark_model.50913_t
Valid prediction for GeneMark_model.50917_t
Valid prediction for snap_scaffold_12-snap.360-T1
Valid prediction for GeneMark_model.50887_t
Valid prediction for GeneMark_model.50908_t
Valid prediction for GeneMark_model.50902_t
Valid prediction for snap_scaffold_12-snap.337-T1
Valid prediction for snap_scaffold_12-snap.341-T1
Valid prediction for GeneMark_model.50920_t
Valid prediction for snap_scaffold_12-snap.355-T1
Valid prediction for GlimmerHMM_glimmerT_29485-T1
Valid prediction for GlimmerHMM_glimmerT_29491-T1
Valid prediction for GeneMark_model.50898_t
Valid prediction for Augustus_model.g19620.t1
Valid prediction for GeneMark_model.50912_t
Valid prediction for snap_scaffold_12-snap.349-T1
Valid prediction for GeneMark_model.50883_t
Valid prediction for GeneMark_model.50891_t
Valid prediction for GeneMark_model.50903_t
Valid prediction for GeneMark_model.50889_t
Valid prediction for snap_scaffold_12-snap.336-T1
Valid prediction for GlimmerHMM_glimmerT_29478-T1
Valid prediction for GeneMark_model.50893_t
Valid prediction for snap_scaffold_12-snap.352-T1
Valid prediction for GeneMark_model.50925_t
Valid prediction for GlimmerHMM_glimmerT_29480-T1
Valid prediction for snap_scaffold_12-snap.340-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_12-snap.333-T1
Valid prediction for GeneMark_model.50926_t
Valid prediction for snap_scaffold_12-snap.350-T1
Valid prediction for GeneMark_model.50894_t
Valid prediction for GlimmerHMM_glimmerT_29477-T1
Valid prediction for snap_scaffold_12-snap.347-T1
Valid prediction for GlimmerHMM_glimmerT_29490-T1
Valid prediction for snap_scaffold_12-snap.353-T1
Valid prediction for GeneMark_model.50909_t
Valid prediction for GeneMark_model.50907_t
Valid prediction for snap_scaffold_12-snap.361-T1
Valid prediction for snap_scaffold_12-snap.334-T1
Valid prediction for GeneMark_model.50904_t
Valid prediction for snap_scaffold_12-snap.358-T1
Valid prediction for Augustus_model.g19618.t1
Valid prediction for snap_scaffold_12-snap.346-T1
Valid prediction for GeneMark_model.50897_t
Valid prediction for GlimmerHMM_glimmerT_29492-T1
Valid prediction for GlimmerHMM_glimmerT_29486-T1
Valid prediction for GeneMark_model.50892_t
Valid prediction for GeneMark_model.50921_t
Valid prediction for GeneMark_model.50914_t
Valid prediction for GlimmerHMM_glimmerT_29488-T1
Valid prediction for GlimmerHMM_glimmerT_29479-T1
Valid prediction for GeneMark_model.50886_t
Valid prediction for snap_scaffold_12-snap.335-T1
Valid prediction for Augustus_model.g19619.t1
Valid prediction for snap_scaffold_12-snap.332-T1
Valid prediction for GlimmerHMM_glimmerT_29489-T1
Valid prediction for snap_scaffold_12-snap.356-T1
Valid prediction for GlimmerHMM_glimmerT_29487-T1
Valid prediction for GeneMark_model.50890_t
Valid prediction for GlimmerHMM_glimmerT_29493-T1
Valid prediction for GlimmerHMM_glimmerT_29496-T1
Valid prediction for GeneMark_model.50884_t
Valid prediction for GlimmerHMM_glimmerT_29495-T1
Valid prediction for snap_scaffold_12-snap.345-T1
Valid prediction for GeneMark_model.50900_t
Valid prediction for GeneMark_model.50910_t
Valid prediction for GeneMark_model.50901_t
Valid prediction for GeneMark_model.50916_t
Valid prediction for GlimmerHMM_glimmerT_29482-T1
Valid prediction for GeneMark_model.50923_t
Valid prediction for GeneMark_model.50895_t
Valid prediction for GlimmerHMM_glimmerT_29484-T1
Valid prediction for snap_scaffold_12-snap.342-T1
Valid prediction for GeneMark_model.50918_t
Valid prediction for snap_scaffold_12-snap.338-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 58747, rend_intergenic: 56247  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78509, rend_intergenic: 78242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144827, rend_intergenic: 139653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151400, rend_intergenic: 147800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172291, rend_intergenic: 170791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180406, rend_intergenic: 174073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237830, rend_intergenic: 235767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 242117
-exon list size: 500


building trellis

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25.9    
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27.3    
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27.7    
27.9    
28.1    
28.3    
28.5    
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28.9    
29.1    
29.3    
29.5    
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29.9    
30.1    
30.3    
30.5    
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30.9    
31.1    
31.3    
31.5    
31.7    
31.9    
32.1    
32.3    
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32.9    
33.1    
33.3    
33.5    
33.7    
33.9    
34.1    
34.3    
34.5    
34.7    
34.9    
35.1    
35.3    
35.5    
35.7    
35.9    
36.1    
36.3    
36.5    
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36.9    
37.1    
37.3    
37.5    
37.6    
37.8    
38.0    
38.2    
38.4    
38.6    
38.8    
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41.4    
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55.2    
55.4    
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56.4    
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61.8    
62.0    
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63.1    
63.3    
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63.9    
64.1    
64.3    
64.5    
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64.9    
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65.3    
65.5    
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65.9    
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67.3    
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69.3    
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78.3    
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79.1    
79.3    
79.5    
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80.1    
80.3    
80.5    
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80.9    
81.1    
81.3    
81.5    
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82.1    
82.3    
82.5    
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82.9    
83.1    
83.3    
83.5    
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83.9    
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84.3    
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84.7    
84.9    
85.1    
85.3    
85.5    
85.7    
85.9    
86.1    
86.3    
86.5    
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86.9    
87.1    
87.3    
87.5    
87.6    
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88.0    
88.2    
88.4    
88.6    
88.8    
89.0    
89.2    
89.4    
89.6    
89.8    
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90.2    
90.4    
90.6    
90.8    
91.0    
91.2    
91.4    
91.6    
91.8    
92.0    
92.2    
92.4    
92.6    
92.8    
93.0    
93.2    
93.4    
93.6    
93.8    
94.0    
94.2    
94.4    
94.6    
94.8    
95.0    
95.2    
95.4    
95.6    
95.8    
96.0    
96.2    
96.4    
96.6    
96.8    
97.0    
97.2    
97.4    
97.6    
97.8    
98.0    
98.2    
98.4    
98.6    
98.8    
99.0    
99.2    
99.4    
99.6    
99.8    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 58747, rend_intergenic: 56247  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78509, rend_intergenic: 78242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144827, rend_intergenic: 139653  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 151400, rend_intergenic: 147800  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 172291, rend_intergenic: 170791  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180406, rend_intergenic: 174073  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237830, rend_intergenic: 235767  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 10 predictions persist after filtering for low support