-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_14476687-14610503

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.53842_t
Valid prediction for snap_scaffold_12-snap.2763-T1
Valid prediction for GlimmerHMM_glimmerT_31182-T1
Valid prediction for GlimmerHMM_glimmerT_31167-T1
Valid prediction for Augustus_model.g20785.t1
Valid prediction for snap_scaffold_12-snap.2754-T1
Valid prediction for GeneMark_model.53822_t
Valid prediction for snap_scaffold_12-snap.2776-T1
Valid prediction for GeneMark_model.53834_t
Valid prediction for GlimmerHMM_glimmerT_31162-T1
Valid prediction for Augustus_model.g20790.t1
Valid prediction for snap_scaffold_12-snap.2752-T1
Valid prediction for GeneMark_model.53825_t
Valid prediction for Augustus_model.g20783.t1
Valid prediction for GeneMark_model.53837_t
Valid prediction for snap_scaffold_12-snap.2764-T1
Valid prediction for snap_scaffold_12-snap.2762-T1
Valid prediction for snap_scaffold_12-snap.2748-T1
Valid prediction for Augustus_model.g20793.t1
Valid prediction for snap_scaffold_12-snap.2773-T1
Valid prediction for GeneMark_model.53818_t
Valid prediction for GeneMark_model.53839_t
Valid prediction for GeneMark_model.53820_t
Valid prediction for GlimmerHMM_glimmerT_31174-T1
Valid prediction for snap_scaffold_12-snap.2761-T1
Valid prediction for snap_scaffold_12-snap.2766-T1
Valid prediction for GeneMark_model.53855_t
Valid prediction for GeneMark_model.53851_t
Valid prediction for snap_scaffold_12-snap.2768-T1
Valid prediction for GeneMark_model.53843_t
Valid prediction for snap_scaffold_12-snap.2778-T1
Valid prediction for snap_scaffold_12-snap.2772-T1
Valid prediction for Augustus_model.g20791.t1
Valid prediction for Augustus_model.g20786.t1
Valid prediction for GeneMark_model.53848_t
Valid prediction for GlimmerHMM_glimmerT_31181-T1
Valid prediction for GlimmerHMM_glimmerT_31175-T1
Valid prediction for GeneMark_model.53816_t
Valid prediction for snap_scaffold_12-snap.2765-T1
Valid prediction for GlimmerHMM_glimmerT_31177-T1
Valid prediction for GeneMark_model.53847_t
Valid prediction for GeneMark_model.53828_t
Valid prediction for GlimmerHMM_glimmerT_31179-T1
Valid prediction for GlimmerHMM_glimmerT_31171-T1
Valid prediction for GeneMark_model.53841_t
Valid prediction for GeneMark_model.53831_t
Valid prediction for GeneMark_model.53853_t
Valid prediction for GlimmerHMM_glimmerT_31172-T1
Valid prediction for snap_scaffold_12-snap.2781-T1
Valid prediction for GeneMark_model.53833_t
Valid prediction for Augustus_model.g20789.t1
Valid prediction for snap_scaffold_12-snap.2749-T1
Valid prediction for GlimmerHMM_glimmerT_31178-T1
Valid prediction for snap_scaffold_12-snap.2757-T1
Valid prediction for GeneMark_model.53844_t
Valid prediction for snap_scaffold_12-snap.2777-T1
Valid prediction for GlimmerHMM_glimmerT_31170-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g20787.t1
Valid prediction for GeneMark_model.53836_t
Valid prediction for snap_scaffold_12-snap.2755-T1
Valid prediction for snap_scaffold_12-snap.2771-T1
Valid prediction for GlimmerHMM_glimmerT_31168-T1
Valid prediction for GeneMark_model.53815_t
Valid prediction for GeneMark_model.53838_t
Valid prediction for snap_scaffold_12-snap.2775-T1
Valid prediction for GeneMark_model.53813_t
Valid prediction for snap_scaffold_12-snap.2753-T1
Valid prediction for GeneMark_model.53814_t
Valid prediction for GeneMark_model.53845_t
Valid prediction for snap_scaffold_12-snap.2770-T1
Valid prediction for GeneMark_model.53835_t
Valid prediction for Augustus_model.g20788.t1
Valid prediction for GeneMark_model.53832_t
Valid prediction for GlimmerHMM_glimmerT_31165-T1
Valid prediction for GlimmerHMM_glimmerT_31169-T1
Valid prediction for GeneMark_model.53819_t
Valid prediction for snap_scaffold_12-snap.2759-T1
Valid prediction for snap_scaffold_12-snap.2758-T1
Valid prediction for snap_scaffold_12-snap.2769-T1
Valid prediction for Augustus_model.g20792.t1
Valid prediction for GeneMark_model.53827_t
Valid prediction for GlimmerHMM_glimmerT_31176-T1
Valid prediction for snap_scaffold_12-snap.2747-T1
Valid prediction for GlimmerHMM_glimmerT_31163-T1
Valid prediction for GeneMark_model.53829_t
Valid prediction for GeneMark_model.53821_t
Valid prediction for GeneMark_model.53824_t
Valid prediction for GeneMark_model.53854_t
Valid prediction for GeneMark_model.53817_t
Valid prediction for snap_scaffold_12-snap.2779-T1
Valid prediction for GlimmerHMM_glimmerT_31173-T1
Valid prediction for snap_scaffold_12-snap.2751-T1
Valid prediction for GlimmerHMM_glimmerT_31180-T1
Valid prediction for GeneMark_model.53826_t
Valid prediction for GeneMark_model.53846_t
Valid prediction for snap_scaffold_12-snap.2756-T1
Valid prediction for GeneMark_model.53840_t
Valid prediction for GeneMark_model.53849_t
Valid prediction for snap_scaffold_12-snap.2760-T1
Valid prediction for Augustus_model.g20784.t1
Valid prediction for snap_scaffold_12-snap.2780-T1
Valid prediction for snap_scaffold_12-snap.2774-T1
Valid prediction for GlimmerHMM_glimmerT_31166-T1
Valid prediction for GeneMark_model.53823_t
Valid prediction for GlimmerHMM_glimmerT_31164-T1
Valid prediction for snap_scaffold_12-snap.2767-T1
Valid prediction for GeneMark_model.53850_t
Valid prediction for GeneMark_model.53830_t
Valid prediction for snap_scaffold_12-snap.2750-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 29031, rend_intergenic: 14070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37762, rend_intergenic: 33444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53901, rend_intergenic: 47527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64384, rend_intergenic: 58310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79564, rend_intergenic: 77870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88557, rend_intergenic: 82342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101944, rend_intergenic: 99469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108659, rend_intergenic: 107633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116948, rend_intergenic: 113154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130139, rend_intergenic: 129563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 133817
-exon list size: 541


building trellis

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91.2    
91.3    
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92.1    
92.3    
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92.6    
92.8    
93.0    
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93.6    
93.7    
93.9    
94.1    
94.3    
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95.0    
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98.0    
98.2    
98.3    
98.5    
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98.9    
99.1    
99.3    
99.4    
99.6    
99.8    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 29031, rend_intergenic: 14070  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37762, rend_intergenic: 33444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53901, rend_intergenic: 47527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 64384, rend_intergenic: 58310  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79564, rend_intergenic: 77870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88557, rend_intergenic: 82342  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101944, rend_intergenic: 99469  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 108659, rend_intergenic: 107633  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116948, rend_intergenic: 113154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130139, rend_intergenic: 129563  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 13322
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support