-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_14302658-14478829

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.53806_t
Valid prediction for Augustus_model.g20775.t1
Valid prediction for snap_scaffold_12-snap.2724-T1
Valid prediction for snap_scaffold_12-snap.2745-T1
Valid prediction for snap_scaffold_12-snap.2717-T1
Valid prediction for GeneMark_model.53798_t
Valid prediction for GeneMark_model.53803_t
Valid prediction for GeneMark_model.53785_t
Valid prediction for GlimmerHMM_glimmerT_31162-T1
Valid prediction for Augustus_model.g20782.t1
Valid prediction for GlimmerHMM_glimmerT_31150-T1
Valid prediction for GeneMark_model.53790_t
Valid prediction for snap_scaffold_12-snap.2728-T1
Valid prediction for GeneMark_model.53762_t
Valid prediction for GeneMark_model.53769_t
Valid prediction for GeneMark_model.53781_t
Valid prediction for GeneMark_model.53797_t
Valid prediction for GlimmerHMM_glimmerT_31146-T1
Valid prediction for Augustus_model.g20779.t1
Valid prediction for GeneMark_model.53793_t
Valid prediction for GlimmerHMM_glimmerT_31141-T1
Valid prediction for snap_scaffold_12-snap.2737-T1
Valid prediction for snap_scaffold_12-snap.2719-T1
Valid prediction for GeneMark_model.53796_t
Valid prediction for GeneMark_model.53767_t
Valid prediction for snap_scaffold_12-snap.2740-T1
Valid prediction for GeneMark_model.53801_t
Valid prediction for GeneMark_model.53776_t
Valid prediction for GeneMark_model.53764_t
Valid prediction for Augustus_model.g20773.t1
Valid prediction for GeneMark_model.53783_t
Valid prediction for snap_scaffold_12-snap.2720-T1
Valid prediction for GeneMark_model.53795_t
Valid prediction for GeneMark_model.53811_t
Valid prediction for GlimmerHMM_glimmerT_31145-T1
Valid prediction for GlimmerHMM_glimmerT_31137-T1
Valid prediction for GlimmerHMM_glimmerT_31151-T1
Valid prediction for GeneMark_model.53788_t
Valid prediction for GlimmerHMM_glimmerT_31132-T1
Valid prediction for GlimmerHMM_glimmerT_31139-T1
Valid prediction for GeneMark_model.53778_t
Valid prediction for Augustus_model.g20777.t1
Valid prediction for snap_scaffold_12-snap.2714-T1
Valid prediction for snap_scaffold_12-snap.2738-T1
Valid prediction for GeneMark_model.53780_t
Valid prediction for GlimmerHMM_glimmerT_31157-T1
Valid prediction for GlimmerHMM_glimmerT_31154-T1
Valid prediction for GlimmerHMM_glimmerT_31140-T1
Valid prediction for Augustus_model.g20774.t1
Valid prediction for snap_scaffold_12-snap.2722-T1
Valid prediction for GeneMark_model.53804_t
Valid prediction for snap_scaffold_12-snap.2734-T1
Valid prediction for Augustus_model.g20769.t1
Valid prediction for GeneMark_model.53773_t
Valid prediction for Augustus_model.g20780.t1
Valid prediction for GlimmerHMM_glimmerT_31129-T1
Valid prediction for GeneMark_model.53771_t
Valid prediction for snap_scaffold_12-snap.2736-T1
Valid prediction for GlimmerHMM_glimmerT_31148-T1
Valid prediction for GlimmerHMM_glimmerT_31161-T1
Valid prediction for GeneMark_model.53807_t
Valid prediction for snap_scaffold_12-snap.2729-T1
Valid prediction for GeneMark_model.53799_t
Valid prediction for snap_scaffold_12-snap.2730-T1
Valid prediction for snap_scaffold_12-snap.2725-T1
Valid prediction for GeneMark_model.53809_t
Valid prediction for Augustus_model.g20772.t1
Valid prediction for GeneMark_model.53766_t
Valid prediction for GlimmerHMM_glimmerT_31138-T1
Valid prediction for GlimmerHMM_glimmerT_31156-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_31142-T1
Valid prediction for GlimmerHMM_glimmerT_31149-T1
Valid prediction for snap_scaffold_12-snap.2733-T1
Valid prediction for snap_scaffold_12-snap.2723-T1
Valid prediction for GeneMark_model.53775_t
Valid prediction for snap_scaffold_12-snap.2746-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for GeneMark_model.53763_t
Valid prediction for GeneMark_model.53784_t
Valid prediction for snap_scaffold_12-snap.2742-T1
Valid prediction for snap_scaffold_12-snap.2741-T1
Valid prediction for GlimmerHMM_glimmerT_31134-T1
Valid prediction for Augustus_model.g20778.t1
Valid prediction for GlimmerHMM_glimmerT_31155-T1
Valid prediction for GeneMark_model.53810_t
Valid prediction for GlimmerHMM_glimmerT_31143-T1
Valid prediction for snap_scaffold_12-snap.2716-T1
Valid prediction for GlimmerHMM_glimmerT_31152-T1
Valid prediction for snap_scaffold_12-snap.2715-T1
Valid prediction for Augustus_model.g20771.t1
Valid prediction for snap_scaffold_12-snap.2726-T1
Valid prediction for GlimmerHMM_glimmerT_31130-T1
Valid prediction for GeneMark_model.53768_t
Valid prediction for GeneMark_model.53761_t
Valid prediction for snap_scaffold_12-snap.2718-T1
Valid prediction for GlimmerHMM_glimmerT_31133-T1
Valid prediction for GlimmerHMM_glimmerT_31147-T1
Valid prediction for GlimmerHMM_glimmerT_31136-T1
Valid prediction for GlimmerHMM_glimmerT_31135-T1
Valid prediction for GlimmerHMM_glimmerT_31159-T1
Valid prediction for GlimmerHMM_glimmerT_31153-T1
Valid prediction for snap_scaffold_12-snap.2744-T1
Valid prediction for snap_scaffold_12-snap.2727-T1
Valid prediction for GeneMark_model.53792_t
Valid prediction for snap_scaffold_12-snap.2739-T1
Valid prediction for GeneMark_model.53786_t
Valid prediction for GeneMark_model.53802_t
Valid prediction for GeneMark_model.53782_t
Valid prediction for GeneMark_model.53777_t
Valid prediction for snap_scaffold_12-snap.2731-T1
Valid prediction for GeneMark_model.53791_t
Valid prediction for GeneMark_model.53794_t
Valid prediction for snap_scaffold_12-snap.2743-T1
Valid prediction for snap_scaffold_12-snap.2735-T1
Valid prediction for GeneMark_model.53805_t
Valid prediction for GlimmerHMM_glimmerT_31131-T1
Valid prediction for GlimmerHMM_glimmerT_31158-T1
Valid prediction for GlimmerHMM_glimmerT_31127-T1
Valid prediction for Augustus_model.g20770.t1
Valid prediction for Augustus_model.g20776.t1
Valid prediction for GlimmerHMM_glimmerT_31144-T1
Valid prediction for GeneMark_model.53774_t
Valid prediction for snap_scaffold_12-snap.2721-T1
Valid prediction for GeneMark_model.53787_t
Valid prediction for GeneMark_model.53772_t
Valid prediction for GeneMark_model.53800_t
Valid prediction for GeneMark_model.53779_t
Valid prediction for Augustus_model.g20781.t1
Valid prediction for GlimmerHMM_glimmerT_31128-T1
Valid prediction for GeneMark_model.53789_t
Valid prediction for GlimmerHMM_glimmerT_31160-T1
Valid prediction for GeneMark_model.53765_t
Valid prediction for GeneMark_model.53808_t
Valid prediction for snap_scaffold_12-snap.2732-T1
Valid prediction for GeneMark_model.53770_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 7535, rend_intergenic: 1755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13832, rend_intergenic: 10500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21012, rend_intergenic: 16611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24131, rend_intergenic: 21123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30891, rend_intergenic: 24593  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31589, rend_intergenic: 31356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44018, rend_intergenic: 31641  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48905, rend_intergenic: 44957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57649, rend_intergenic: 53531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66020, rend_intergenic: 64510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83296, rend_intergenic: 80815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95739, rend_intergenic: 86549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155822, rend_intergenic: 136689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173959, rend_intergenic: 169479  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 176172
-exon list size: 671


building trellis

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-found 38 predictions from path traversal
Error with prediction: snap lend_intergenic: 7535, rend_intergenic: 1755  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 13832, rend_intergenic: 10500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21012, rend_intergenic: 16611  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24131, rend_intergenic: 21123  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30891, rend_intergenic: 24593  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31589, rend_intergenic: 31356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44018, rend_intergenic: 31641  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48905, rend_intergenic: 44957  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57649, rend_intergenic: 53531  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66020, rend_intergenic: 64510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83296, rend_intergenic: 80815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95739, rend_intergenic: 86549  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 155822, rend_intergenic: 136689  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 173959, rend_intergenic: 169479  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 20 predictions persist after filtering for low support