-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_12095207-12242492

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.53146_t
Valid prediction for Augustus_model.g20549.t1
Valid prediction for snap_scaffold_12-snap.2263-T1
Valid prediction for GeneMark_model.53136_t
Valid prediction for snap_scaffold_12-snap.2256-T1
Valid prediction for snap_scaffold_12-snap.2262-T1
Valid prediction for GeneMark_model.53138_t
Valid prediction for GeneMark_model.53139_t
Valid prediction for snap_scaffold_12-snap.2259-T1
Valid prediction for GeneMark_model.53144_t
Valid prediction for Augustus_model.g20543.t1
Valid prediction for GlimmerHMM_glimmerT_30797-T1
Valid prediction for GlimmerHMM_glimmerT_30803-T1
Valid prediction for snap_scaffold_12-snap.2258-T1
Valid prediction for GeneMark_model.53160_t
Valid prediction for GeneMark_model.53156_t
Valid prediction for GeneMark_model.53134_t
Valid prediction for GeneMark_model.53142_t
Valid prediction for GlimmerHMM_glimmerT_30811-T1
Valid prediction for snap_scaffold_12-snap.2252-T1
Valid prediction for GeneMark_model.53154_t
Valid prediction for Augustus_model.g20546.t1
Valid prediction for GeneMark_model.53132_t
Valid prediction for snap_scaffold_12-snap.2250-T1
Valid prediction for GlimmerHMM_glimmerT_30804-T1
Valid prediction for GlimmerHMM_glimmerT_30796-T1
Valid prediction for Augustus_model.g20545.t1
Valid prediction for GeneMark_model.53151_t
Valid prediction for snap_scaffold_12-snap.2243-T1
Valid prediction for GeneMark_model.53137_t
Valid prediction for GeneMark_model.53140_t
Valid prediction for GeneMark_model.53148_t
Valid prediction for snap_scaffold_12-snap.2244-T1
Valid prediction for GeneMark_model.53158_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g20542.t1
Valid prediction for snap_scaffold_12-snap.2249-T1
Valid prediction for GlimmerHMM_glimmerT_30801-T1
Valid prediction for snap_scaffold_12-snap.2247-T1
Valid prediction for snap_scaffold_12-snap.2254-T1
Valid prediction for snap_scaffold_12-snap.2241-T1
Valid prediction for Augustus_model.g20547.t1
Valid prediction for snap_scaffold_12-snap.2253-T1
Valid prediction for GeneMark_model.53149_t
Valid prediction for GeneMark_model.53135_t
Valid prediction for snap_scaffold_12-snap.2255-T1
Valid prediction for GlimmerHMM_glimmerT_30807-T1
Valid prediction for GlimmerHMM_glimmerT_30810-T1
Valid prediction for snap_scaffold_12-snap.2245-T1
Valid prediction for snap_scaffold_12-snap.2257-T1
Valid prediction for GlimmerHMM_glimmerT_30808-T1
Valid prediction for GeneMark_model.53133_t
Valid prediction for GlimmerHMM_glimmerT_30805-T1
Valid prediction for GeneMark_model.53143_t
Valid prediction for GeneMark_model.53153_t
Valid prediction for snap_scaffold_12-snap.2251-T1
Valid prediction for GeneMark_model.53141_t
Valid prediction for GlimmerHMM_glimmerT_30806-T1
Valid prediction for GeneMark_model.53152_t
Valid prediction for snap_scaffold_12-snap.2242-T1
Valid prediction for GlimmerHMM_glimmerT_30799-T1
Valid prediction for GlimmerHMM_glimmerT_30802-T1
Valid prediction for snap_scaffold_12-snap.2260-T1
Valid prediction for snap_scaffold_12-snap.2240-T1
Valid prediction for Augustus_model.g20548.t1
Valid prediction for GlimmerHMM_glimmerT_30800-T1
Valid prediction for GeneMark_model.53150_t
Valid prediction for snap_scaffold_12-snap.2248-T1
Valid prediction for GeneMark_model.53159_t
Valid prediction for Augustus_model.g20544.t1
Valid prediction for GeneMark_model.53145_t
Valid prediction for snap_scaffold_12-snap.2246-T1
Valid prediction for GeneMark_model.53147_t
Valid prediction for snap_scaffold_12-snap.2261-T1
Valid prediction for GlimmerHMM_glimmerT_30809-T1
Valid prediction for snap_scaffold_12-snap.2239-T1
Valid prediction for GlimmerHMM_glimmerT_30798-T1
Valid prediction for GeneMark_model.53155_t
Valid prediction for GeneMark_model.53157_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 59692, rend_intergenic: 58284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141066, rend_intergenic: 137306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 147286
-exon list size: 301


building trellis

0.3    
0.7    
1.0    
1.3    
1.7    
2.0    
2.3    
2.6    
3.0    
3.3    
3.6    
4.0    
4.3    
4.6    
5.0    
5.3    
5.6    
5.9    
6.3    
6.6    
6.9    
7.3    
7.6    
7.9    
8.3    
8.6    
8.9    
9.2    
9.6    
9.9    
10.2    
10.6    
10.9    
11.2    
11.6    
11.9    
12.2    
12.5    
12.9    
13.2    
13.5    
13.9    
14.2    
14.5    
14.9    
15.2    
15.5    
15.8    
16.2    
16.5    
16.8    
17.2    
17.5    
17.8    
18.2    
18.5    
18.8    
19.1    
19.5    
19.8    
20.1    
20.5    
20.8    
21.1    
21.5    
21.8    
22.1    
22.4    
22.8    
23.1    
23.4    
23.8    
24.1    
24.4    
24.8    
25.1    
25.4    
25.7    
26.1    
26.4    
26.7    
27.1    
27.4    
27.7    
28.1    
28.4    
28.7    
29.0    
29.4    
29.7    
30.0    
30.4    
30.7    
31.0    
31.4    
31.7    
32.0    
32.3    
32.7    
33.0    
33.3    
33.7    
34.0    
34.3    
34.7    
35.0    
35.3    
35.6    
36.0    
36.3    
36.6    
37.0    
37.3    
37.6    
38.0    
38.3    
38.6    
38.9    
39.3    
39.6    
39.9    
40.3    
40.6    
40.9    
41.3    
41.6    
41.9    
42.2    
42.6    
42.9    
43.2    
43.6    
43.9    
44.2    
44.6    
44.9    
45.2    
45.5    
45.9    
46.2    
46.5    
46.9    
47.2    
47.5    
47.9    
48.2    
48.5    
48.8    
49.2    
49.5    
49.8    
50.2    
50.5    
50.8    
51.2    
51.5    
51.8    
52.1    
52.5    
52.8    
53.1    
53.5    
53.8    
54.1    
54.5    
54.8    
55.1    
55.4    
55.8    
56.1    
56.4    
56.8    
57.1    
57.4    
57.8    
58.1    
58.4    
58.7    
59.1    
59.4    
59.7    
60.1    
60.4    
60.7    
61.1    
61.4    
61.7    
62.0    
62.4    
62.7    
63.0    
63.4    
63.7    
64.0    
64.4    
64.7    
65.0    
65.3    
65.7    
66.0    
66.3    
66.7    
67.0    
67.3    
67.7    
68.0    
68.3    
68.6    
69.0    
69.3    
69.6    
70.0    
70.3    
70.6    
71.0    
71.3    
71.6    
71.9    
72.3    
72.6    
72.9    
73.3    
73.6    
73.9    
74.3    
74.6    
74.9    
75.2    
75.6    
75.9    
76.2    
76.6    
76.9    
77.2    
77.6    
77.9    
78.2    
78.5    
78.9    
79.2    
79.5    
79.9    
80.2    
80.5    
80.9    
81.2    
81.5    
81.8    
82.2    
82.5    
82.8    
83.2    
83.5    
83.8    
84.2    
84.5    
84.8    
85.1    
85.5    
85.8    
86.1    
86.5    
86.8    
87.1    
87.5    
87.8    
88.1    
88.4    
88.8    
89.1    
89.4    
89.8    
90.1    
90.4    
90.8    
91.1    
91.4    
91.7    
92.1    
92.4    
92.7    
93.1    
93.4    
93.7    
94.1    
94.4    
94.7    
95.0    
95.4    
95.7    
96.0    
96.4    
96.7    
97.0    
97.4    
97.7    
98.0    
98.3    
98.7    
99.0    
99.3    
99.7    
-found 17 predictions from path traversal
Error with prediction: snap lend_intergenic: 59692, rend_intergenic: 58284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141066, rend_intergenic: 137306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support