-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_10845088-11003237

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_30669-T1
Valid prediction for GlimmerHMM_glimmerT_30670-T1
Valid prediction for GeneMark_model.52933_t
Valid prediction for GeneMark_model.52949_t
Valid prediction for Augustus_model.g20448.t1
Valid prediction for GeneMark_model.52942_t
Valid prediction for snap_scaffold_12-snap.2063-T1
Valid prediction for snap_scaffold_12-snap.2076-T1
Valid prediction for snap_scaffold_12-snap.2073-T1
Valid prediction for GeneMark_model.52951_t
Valid prediction for GeneMark_model.52935_t
Valid prediction for GeneMark_model.52924_t
Valid prediction for snap_scaffold_12-snap.2071-T1
Valid prediction for GlimmerHMM_glimmerT_30673-T1
Valid prediction for GlimmerHMM_glimmerT_30662-T1
Valid prediction for GlimmerHMM_glimmerT_30660-T1
Valid prediction for snap_scaffold_12-snap.2069-T1
Valid prediction for GeneMark_model.52928_t
Valid prediction for GeneMark_model.52938_t
Valid prediction for snap_scaffold_12-snap.2078-T1
Valid prediction for GeneMark_model.52931_t
Valid prediction for GlimmerHMM_glimmerT_30664-T1
Valid prediction for snap_scaffold_12-snap.2060-T1
Valid prediction for GeneMark_model.52948_t
Valid prediction for snap_scaffold_12-snap.2055-T1
Valid prediction for GeneMark_model.52950_t
Valid prediction for GeneMark_model.52946_t
Valid prediction for snap_scaffold_12-snap.2065-T1
Valid prediction for Augustus_model.g20449.t1
Valid prediction for GlimmerHMM_glimmerT_30667-T1
Valid prediction for Augustus_model.g20446.t1
Valid prediction for GlimmerHMM_glimmerT_30659-T1
Valid prediction for GeneMark_model.52941_t
Valid prediction for GlimmerHMM_glimmerT_30675-T1
Valid prediction for GeneMark_model.52939_t
Valid prediction for GeneMark_model.52926_t
Valid prediction for GeneMark_model.52921_t
Valid prediction for GlimmerHMM_glimmerT_30658-T1
Valid prediction for GeneMark_model.52944_t
Valid prediction for GeneMark_model.52937_t
Valid prediction for Augustus_model.g20447.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.52929_t
Valid prediction for snap_scaffold_12-snap.2057-T1
Valid prediction for Augustus_model.g20451.t1
Valid prediction for GeneMark_model.52927_t
Valid prediction for snap_scaffold_12-snap.2062-T1
Valid prediction for GlimmerHMM_glimmerT_30665-T1
Valid prediction for snap_scaffold_12-snap.2074-T1
Valid prediction for snap_scaffold_12-snap.2066-T1
Valid prediction for GlimmerHMM_glimmerT_30657-T1
Valid prediction for GlimmerHMM_glimmerT_30674-T1
Valid prediction for Augustus_model.g20455.t1
Valid prediction for snap_scaffold_12-snap.2056-T1
Valid prediction for Augustus_model.g20453.t1
Valid prediction for snap_scaffold_12-snap.2072-T1
Valid prediction for Augustus_model.g20450.t1
Valid prediction for GeneMark_model.52945_t
Valid prediction for snap_scaffold_12-snap.2079-T1
Valid prediction for GeneMark_model.52934_t
Valid prediction for GlimmerHMM_glimmerT_30668-T1
Valid prediction for Augustus_model.g20454.t1
Valid prediction for GeneMark_model.52922_t
Valid prediction for GlimmerHMM_glimmerT_30672-T1
Valid prediction for snap_scaffold_12-snap.2070-T1
Valid prediction for snap_scaffold_12-snap.2064-T1
Valid prediction for snap_scaffold_12-snap.2059-T1
Valid prediction for Augustus_model.g20452.t1
Valid prediction for GeneMark_model.52930_t
Valid prediction for snap_scaffold_12-snap.2075-T1
Valid prediction for snap_scaffold_12-snap.2077-T1
Valid prediction for GlimmerHMM_glimmerT_30661-T1
Valid prediction for GeneMark_model.52925_t
Valid prediction for snap_scaffold_12-snap.2061-T1
Valid prediction for GlimmerHMM_glimmerT_30671-T1
Valid prediction for snap_scaffold_12-snap.2067-T1
Valid prediction for GlimmerHMM_glimmerT_30656-T1
Valid prediction for GeneMark_model.52943_t
Valid prediction for GeneMark_model.52936_t
Valid prediction for GlimmerHMM_glimmerT_30666-T1
Valid prediction for GlimmerHMM_glimmerT_30663-T1
Valid prediction for GeneMark_model.52932_t
Valid prediction for snap_scaffold_12-snap.2058-T1
Valid prediction for GeneMark_model.52940_t
Valid prediction for snap_scaffold_12-snap.2068-T1
Valid prediction for GeneMark_model.52947_t
Valid prediction for GeneMark_model.52923_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 66802, rend_intergenic: 61982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75338, rend_intergenic: 73305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84921, rend_intergenic: 78919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105914, rend_intergenic: 98264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112176, rend_intergenic: 108148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127328, rend_intergenic: 126248  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134101, rend_intergenic: 133795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142571, rend_intergenic: 135012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 158150
-exon list size: 340


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.0    
2.3    
2.6    
2.9    
3.2    
3.5    
3.8    
4.1    
4.4    
4.7    
5.0    
5.3    
5.6    
5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.6    
7.9    
8.2    
8.5    
8.8    
9.1    
9.4    
9.6    
9.9    
10.2    
10.5    
10.8    
11.1    
11.4    
11.7    
12.0    
12.3    
12.6    
12.9    
13.2    
13.5    
13.7    
14.0    
14.3    
14.6    
14.9    
15.2    
15.5    
15.8    
16.1    
16.4    
16.7    
17.0    
17.3    
17.5    
17.8    
18.1    
18.4    
18.7    
19.0    
19.3    
19.6    
19.9    
20.2    
20.5    
20.8    
21.1    
21.3    
21.6    
21.9    
22.2    
22.5    
22.8    
23.1    
23.4    
23.7    
24.0    
24.3    
24.6    
24.9    
25.1    
25.4    
25.7    
26.0    
26.3    
26.6    
26.9    
27.2    
27.5    
27.8    
28.1    
28.4    
28.7    
28.9    
29.2    
29.5    
29.8    
30.1    
30.4    
30.7    
31.0    
31.3    
31.6    
31.9    
32.2    
32.5    
32.7    
33.0    
33.3    
33.6    
33.9    
34.2    
34.5    
34.8    
35.1    
35.4    
35.7    
36.0    
36.3    
36.5    
36.8    
37.1    
37.4    
37.7    
38.0    
38.3    
38.6    
38.9    
39.2    
39.5    
39.8    
40.1    
40.4    
40.6    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.2    
44.4    
44.7    
45.0    
45.3    
45.6    
45.9    
46.2    
46.5    
46.8    
47.1    
47.4    
47.7    
48.0    
48.2    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.8    
52.0    
52.3    
52.6    
52.9    
53.2    
53.5    
53.8    
54.1    
54.4    
54.7    
55.0    
55.3    
55.6    
55.8    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.4    
59.6    
59.9    
60.2    
60.5    
60.8    
61.1    
61.4    
61.7    
62.0    
62.3    
62.6    
62.9    
63.2    
63.5    
63.7    
64.0    
64.3    
64.6    
64.9    
65.2    
65.5    
65.8    
66.1    
66.4    
66.7    
67.0    
67.3    
67.5    
67.8    
68.1    
68.4    
68.7    
69.0    
69.3    
69.6    
69.9    
70.2    
70.5    
70.8    
71.1    
71.3    
71.6    
71.9    
72.2    
72.5    
72.8    
73.1    
73.4    
73.7    
74.0    
74.3    
74.6    
74.9    
75.1    
75.4    
75.7    
76.0    
76.3    
76.6    
76.9    
77.2    
77.5    
77.8    
78.1    
78.4    
78.7    
78.9    
79.2    
79.5    
79.8    
80.1    
80.4    
80.7    
81.0    
81.3    
81.6    
81.9    
82.2    
82.5    
82.7    
83.0    
83.3    
83.6    
83.9    
84.2    
84.5    
84.8    
85.1    
85.4    
85.7    
86.0    
86.3    
86.5    
86.8    
87.1    
87.4    
87.7    
88.0    
88.3    
88.6    
88.9    
89.2    
89.5    
89.8    
90.1    
90.4    
90.6    
90.9    
91.2    
91.5    
91.8    
92.1    
92.4    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.4    
94.7    
95.0    
95.3    
95.6    
95.9    
96.2    
96.5    
96.8    
97.1    
97.4    
97.7    
98.0    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 22 predictions from path traversal
Error with prediction: snap lend_intergenic: 66802, rend_intergenic: 61982  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75338, rend_intergenic: 73305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 84921, rend_intergenic: 78919  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105914, rend_intergenic: 98264  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112176, rend_intergenic: 108148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 127328, rend_intergenic: 126248  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134101, rend_intergenic: 133795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 142571, rend_intergenic: 135012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 10357
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support