-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_10670987-10847283

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g20444.t1
Valid prediction for snap_scaffold_12-snap.2040-T1
Valid prediction for GeneMark_model.52897_t
Valid prediction for GeneMark_model.52906_t
Valid prediction for GlimmerHMM_glimmerT_30646-T1
Valid prediction for snap_scaffold_12-snap.2054-T1
Valid prediction for GlimmerHMM_glimmerT_30650-T1
Valid prediction for GlimmerHMM_glimmerT_30647-T1
Valid prediction for GlimmerHMM_glimmerT_30651-T1
Valid prediction for GlimmerHMM_glimmerT_30645-T1
Valid prediction for snap_scaffold_12-snap.2037-T1
Valid prediction for GeneMark_model.52899_t
Valid prediction for GeneMark_model.52918_t
Valid prediction for GeneMark_model.52919_t
Valid prediction for GlimmerHMM_glimmerT_30655-T1
Valid prediction for Augustus_model.g20438.t1
Valid prediction for GeneMark_model.52895_t
Valid prediction for GlimmerHMM_glimmerT_30653-T1
Valid prediction for GeneMark_model.52913_t
Valid prediction for GeneMark_model.52910_t
Valid prediction for GeneMark_model.52902_t
Valid prediction for GeneMark_model.52914_t
Valid prediction for GeneMark_model.52905_t
Valid prediction for GlimmerHMM_glimmerT_30648-T1
Valid prediction for snap_scaffold_12-snap.2050-T1
Valid prediction for GeneMark_model.52900_t
Valid prediction for snap_scaffold_12-snap.2049-T1
Valid prediction for GeneMark_model.52907_t
Couldn't classify 132838, 133227
Sorry, prediction pasa_asmbl_8922.p1 fails validation.
(ACC)	 GC	132838-133227	CA	AAC
Valid prediction for snap_scaffold_12-snap.2043-T1
Valid prediction for snap_scaffold_12-snap.2051-T1
Valid prediction for Augustus_model.g20443.t1
Valid prediction for GlimmerHMM_glimmerT_30654-T1
Valid prediction for GeneMark_model.52903_t
Valid prediction for Augustus_model.g20439.t1
Valid prediction for Augustus_model.g20440.t1
Valid prediction for snap_scaffold_12-snap.2048-T1
Valid prediction for GeneMark_model.52916_t
Valid prediction for Augustus_model.g20445.t1
Valid prediction for GeneMark_model.52915_t
Valid prediction for GlimmerHMM_glimmerT_30642-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g20436.t1
Valid prediction for snap_scaffold_12-snap.2044-T1
Valid prediction for GeneMark_model.52898_t
Valid prediction for GeneMark_model.52896_t
Valid prediction for GeneMark_model.52920_t
Valid prediction for GlimmerHMM_glimmerT_30649-T1
Valid prediction for Augustus_model.g20442.t1
Valid prediction for GeneMark_model.52908_t
Valid prediction for snap_scaffold_12-snap.2046-T1
Valid prediction for Augustus_model.g20441.t1
Valid prediction for snap_scaffold_12-snap.2053-T1
Valid prediction for snap_scaffold_12-snap.2041-T1
Valid prediction for snap_scaffold_12-snap.2039-T1
Valid prediction for snap_scaffold_12-snap.2036-T1
Valid prediction for GlimmerHMM_glimmerT_30644-T1
Valid prediction for GlimmerHMM_glimmerT_30643-T1
Valid prediction for Augustus_model.g20437.t1
Valid prediction for GeneMark_model.52904_t
Valid prediction for GeneMark_model.52917_t
Valid prediction for GlimmerHMM_glimmerT_30652-T1
Valid prediction for snap_scaffold_12-snap.2047-T1
Valid prediction for GlimmerHMM_glimmerT_30641-T1
Valid prediction for GeneMark_model.52911_t
Valid prediction for snap_scaffold_12-snap.2052-T1
Valid prediction for snap_scaffold_12-snap.2042-T1
Valid prediction for snap_scaffold_12-snap.2038-T1
Valid prediction for GlimmerHMM_glimmerT_30639-T1
Valid prediction for GeneMark_model.52901_t
Valid prediction for GlimmerHMM_glimmerT_30640-T1
Valid prediction for GeneMark_model.52909_t
Valid prediction for GeneMark_model.52912_t
Valid prediction for snap_scaffold_12-snap.2045-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 176297
-exon list size: 230


building trellis

0.4    
0.9    
1.3    
1.7    
2.2    
2.6    
3.0    
3.4    
3.9    
4.3    
4.7    
5.2    
5.6    
6.0    
6.5    
6.9    
7.3    
7.8    
8.2    
8.6    
9.1    
9.5    
9.9    
10.3    
10.8    
11.2    
11.6    
12.1    
12.5    
12.9    
13.4    
13.8    
14.2    
14.7    
15.1    
15.5    
15.9    
16.4    
16.8    
17.2    
17.7    
18.1    
18.5    
19.0    
19.4    
19.8    
20.3    
20.7    
21.1    
21.6    
22.0    
22.4    
22.8    
23.3    
23.7    
24.1    
24.6    
25.0    
25.4    
25.9    
26.3    
26.7    
27.2    
27.6    
28.0    
28.4    
28.9    
29.3    
29.7    
30.2    
30.6    
31.0    
31.5    
31.9    
32.3    
32.8    
33.2    
33.6    
34.1    
34.5    
34.9    
35.3    
35.8    
36.2    
36.6    
37.1    
37.5    
37.9    
38.4    
38.8    
39.2    
39.7    
40.1    
40.5    
40.9    
41.4    
41.8    
42.2    
42.7    
43.1    
43.5    
44.0    
44.4    
44.8    
45.3    
45.7    
46.1    
46.6    
47.0    
47.4    
47.8    
48.3    
48.7    
49.1    
49.6    
50.0    
50.4    
50.9    
51.3    
51.7    
52.2    
52.6    
53.0    
53.4    
53.9    
54.3    
54.7    
55.2    
55.6    
56.0    
56.5    
56.9    
57.3    
57.8    
58.2    
58.6    
59.1    
59.5    
59.9    
60.3    
60.8    
61.2    
61.6    
62.1    
62.5    
62.9    
63.4    
63.8    
64.2    
64.7    
65.1    
65.5    
65.9    
66.4    
66.8    
67.2    
67.7    
68.1    
68.5    
69.0    
69.4    
69.8    
70.3    
70.7    
71.1    
71.6    
72.0    
72.4    
72.8    
73.3    
73.7    
74.1    
74.6    
75.0    
75.4    
75.9    
76.3    
76.7    
77.2    
77.6    
78.0    
78.4    
78.9    
79.3    
79.7    
80.2    
80.6    
81.0    
81.5    
81.9    
82.3    
82.8    
83.2    
83.6    
84.1    
84.5    
84.9    
85.3    
85.8    
86.2    
86.6    
87.1    
87.5    
87.9    
88.4    
88.8    
89.2    
89.7    
90.1    
90.5    
90.9    
91.4    
91.8    
92.2    
92.7    
93.1    
93.5    
94.0    
94.4    
94.8    
95.3    
95.7    
96.1    
96.6    
97.0    
97.4    
97.8    
98.3    
98.7    
99.1    
99.6    
-found 15 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 9 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 162565 - 176297
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 162565 - 175109
-exon list size: 3


building trellis

20.0    
40.0    
60.0    
80.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 162565 - 173924
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support