-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_10075778-10271735

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_12-snap.1949-T1
Valid prediction for snap_scaffold_12-snap.1958-T1
Valid prediction for snap_scaffold_12-snap.1957-T1
Valid prediction for GeneMark_model.52814_t
Valid prediction for GeneMark_model.52809_t
Valid prediction for GeneMark_model.52777_t
Valid prediction for GeneMark_model.52805_t
Valid prediction for snap_scaffold_12-snap.1953-T1
Valid prediction for GlimmerHMM_glimmerT_30564-T1
Valid prediction for Augustus_model.g20376.t1
Valid prediction for CodingQuarry_transcript_10332-T1
Valid prediction for snap_scaffold_12-snap.1927-T1
Valid prediction for GeneMark_model.52804_t
Valid prediction for GeneMark_model.52829_t
Valid prediction for snap_scaffold_12-snap.1935-T1
Valid prediction for GlimmerHMM_glimmerT_30580-T1
Valid prediction for GlimmerHMM_glimmerT_30571-T1
Valid prediction for GeneMark_model.52827_t
Valid prediction for snap_scaffold_12-snap.1929-T1
Valid prediction for GeneMark_model.52824_t
Valid prediction for snap_scaffold_12-snap.1942-T1
Valid prediction for GlimmerHMM_glimmerT_30563-T1
Valid prediction for GeneMark_model.52821_t
Valid prediction for snap_scaffold_12-snap.1960-T1
Couldn't classify 121644, 121703
Sorry, prediction pasa_asmbl_8880.p1 fails validation.
(CCT)	 TG	121644-121703	GT	TGG
(CCA)	 AG	122117-122269	GT	AGG
(GTA)	 AG	122401-122533	GT	CGG
(ATG)	 AG	122620-122714	GT	TGG
(CCT)	 AG	122833-122943	GT	AGG
(GCC)	 AG	123072-123287	GT	AGG
(GAT)	 AG	123395-123521	GT	AGG
(ACT)	 AG	123693-123835	GT	AGG
(GGG)	 AG	123935-124160	GT	AGG
(GAA)	 AG	124403-124777	GT	TAG
(ACT)	 AG	125000-125093	GT	AGG
(GTT)	 AG	125235-125337	TG	AGT
add_exon() Sorry, pasa_asmbl_8880.p1 122620-122714-initial-1 is invalid.
-recovered pasa_asmbl_8880.p1, initial, 122620, 122714
-recovered pasa_asmbl_8880.p1, terminal, 125235, 125337
-recovered pasa_asmbl_8880.p1, internal, 122117, 122269
-recovered pasa_asmbl_8880.p1, internal, 122401, 122533
-recovered pasa_asmbl_8880.p1, internal, 122620, 122714
-recovered pasa_asmbl_8880.p1, internal, 122833, 122943
-recovered pasa_asmbl_8880.p1, internal, 123072, 123287
-recovered pasa_asmbl_8880.p1, internal, 123395, 123521
-recovered pasa_asmbl_8880.p1, internal, 123693, 123835
-recovered pasa_asmbl_8880.p1, internal, 123935, 124160
-recovered pasa_asmbl_8880.p1, internal, 124403, 124777
-recovered pasa_asmbl_8880.p1, internal, 125000, 125093
Valid prediction for GeneMark_model.52833_t
Valid prediction for GeneMark_model.52812_t
Valid prediction for GeneMark_model.52837_t
Valid prediction for GeneMark_model.52823_t
Valid prediction for snap_scaffold_12-snap.1939-T1
Valid prediction for GlimmerHMM_glimmerT_30575-T1
Valid prediction for GeneMark_model.52785_t
Valid prediction for GeneMark_model.52779_t
Valid prediction for GeneMark_model.52835_t
Valid prediction for pasa_asmbl_8881.p1
Valid prediction for Augustus_model.g20369.t1
Valid prediction for HiQ_model.g20382.t1
Valid prediction for Augustus_model.g20378.t1
Valid prediction for GeneMark_model.52803_t
Valid prediction for GeneMark_model.52831_t
Valid prediction for Augustus_model.g20388.t1
Valid prediction for GeneMark_model.52801_t
Valid prediction for snap_scaffold_12-snap.1921-T1
Valid prediction for GeneMark_model.52799_t
Valid prediction for HiQ_model.g20383.t1
Valid prediction for GeneMark_model.52790_t
Valid prediction for pasa_asmbl_8872.p1
Valid prediction for snap_scaffold_12-snap.1952-T1
Couldn't classify 85587, 86327
Sorry, prediction pasa_asmbl_8869.p1 fails validation.
(AAA)	 TA	85587-86327	CA	AGC
Valid prediction for GeneMark_model.52797_t
Valid prediction for GeneMark_model.52800_t
Valid prediction for GeneMark_model.52784_t
Valid prediction for snap_scaffold_12-snap.1940-T1
Valid prediction for GlimmerHMM_glimmerT_30570-T1
Valid prediction for HiQ_model.g20380.t1
Valid prediction for GeneMark_model.52786_t
Valid prediction for snap_scaffold_12-snap.1956-T1
Valid prediction for GlimmerHMM_glimmerT_30567-T1
Valid prediction for snap_scaffold_12-snap.1930-T1
Valid prediction for snap_scaffold_12-snap.1955-T1
Valid prediction for GeneMark_model.52778_t
Valid prediction for Augustus_model.g20385.t1
Valid prediction for snap_scaffold_12-snap.1933-T1
Valid prediction for GeneMark_model.52781_t
Valid prediction for GeneMark_model.52780_t
Valid prediction for pasa_asmbl_8871.p1
Valid prediction for GeneMark_model.52795_t
Couldn't classify 118726, 118875
Couldn't classify 121112, 121194
Sorry, prediction pasa_asmbl_8879.p2 fails validation.
(GCG)	 AG	118726-118875	GT	AGG
(GGC)	 AG	119938-120027	GT	AGG
(CTG)	 AG	120414-120597	GT	AGG
(GAC)	 AG	121112-121194	AT	TCA
-recovered pasa_asmbl_8879.p2, internal, 118726, 118875
-recovered pasa_asmbl_8879.p2, internal, 119938, 120027
-recovered pasa_asmbl_8879.p2, internal, 120414, 120597
Valid prediction for snap_scaffold_12-snap.1922-T1
Valid prediction for GlimmerHMM_glimmerT_30572-T1
Valid prediction for GeneMark_model.52816_t
Valid prediction for HiQ_model.g20387.t1
Valid prediction for GeneMark_model.52818_t
Valid prediction for pasa_asmbl_8874.p1
Valid prediction for GeneMark_model.52789_t
Valid prediction for snap_scaffold_12-snap.1946-T1
Valid prediction for CodingQuarry_transcript_10333-T1
Valid prediction for snap_scaffold_12-snap.1924-T1
Valid prediction for GeneMark_model.52817_t
Valid prediction for Augustus_model.g20371.t1
Valid prediction for GlimmerHMM_glimmerT_30565-T1
Valid prediction for GlimmerHMM_glimmerT_30569-T1
Valid prediction for snap_scaffold_12-snap.1936-T1
Valid prediction for Augustus_model.g20381.t1
Valid prediction for GeneMark_model.52787_t
Valid prediction for CodingQuarry_transcript_10337-T1
Valid prediction for GeneMark_model.52832_t
Valid prediction for GeneMark_model.52820_t
Valid prediction for GeneMark_model.52792_t
Valid prediction for snap_scaffold_12-snap.1938-T1
Valid prediction for GlimmerHMM_glimmerT_30574-T1
Valid prediction for CodingQuarry_transcript_10331-T1
Valid prediction for GlimmerHMM_glimmerT_30576-T1
Valid prediction for snap_scaffold_12-snap.1950-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g20377.t1
Valid prediction for Augustus_model.g20389.t1
Valid prediction for snap_scaffold_12-snap.1948-T1
Valid prediction for GeneMark_model.52793_t
Valid prediction for CodingQuarry_transcript_10336-T1
Valid prediction for Augustus_model.g20375.t1
Valid prediction for GeneMark_model.52834_t
Valid prediction for Augustus_model.g20373.t1
Valid prediction for GeneMark_model.52828_t
Valid prediction for GeneMark_model.52798_t
Valid prediction for GlimmerHMM_glimmerT_30578-T1
Valid prediction for GeneMark_model.52810_t
Valid prediction for GlimmerHMM_glimmerT_30573-T1
Valid prediction for GeneMark_model.52783_t
Valid prediction for CodingQuarry_transcript_10330-T1
Valid prediction for GeneMark_model.52802_t
Valid prediction for GeneMark_model.52788_t
Valid prediction for pasa_asmbl_7857.p1
Valid prediction for GeneMark_model.52811_t
Valid prediction for GeneMark_model.52826_t
Valid prediction for snap_scaffold_12-snap.1941-T1
Valid prediction for HiQ_model.g20384.t1
Valid prediction for GeneMark_model.52815_t
Valid prediction for Augustus_model.g20368.t1
Valid prediction for snap_scaffold_12-snap.1920-T1
Valid prediction for CodingQuarry_transcript_10334-T1
Valid prediction for snap_scaffold_12-snap.1959-T1
Valid prediction for CodingQuarry_transcript_10335-T1
Valid prediction for Augustus_model.g20390.t1
Valid prediction for snap_scaffold_12-snap.1925-T1
Valid prediction for GeneMark_model.52836_t
Valid prediction for GeneMark_model.52825_t
Valid prediction for GeneMark_model.52791_t
Valid prediction for Augustus_model.g20372.t1
Valid prediction for GeneMark_model.52822_t
Valid prediction for GeneMark_model.52806_t
Valid prediction for snap_scaffold_12-snap.1961-T1
Valid prediction for GlimmerHMM_glimmerT_30581-T1
Valid prediction for GlimmerHMM_glimmerT_30561-T1
Valid prediction for snap_scaffold_12-snap.1931-T1
Couldn't classify 43234, 43301
Sorry, prediction pasa_asmbl_7868.p1 fails validation.
(AGA)	 CT	43234-43301	GT	CTG
(GGA)	 AG	44983-45129	GT	CGG
(GGT)	 AG	46069-46309	GT	AGG
(CCC)	 AG	47334-47451	GT	AGG
(GAG)	 AG	47735-47821	GT	AGG
(GCA)	 AG	48071-48090	CC	GAC
-recovered pasa_asmbl_7868.p1, terminal, 48071, 48090
-recovered pasa_asmbl_7868.p1, internal, 44983, 45129
-recovered pasa_asmbl_7868.p1, internal, 46069, 46309
-recovered pasa_asmbl_7868.p1, internal, 47334, 47451
-recovered pasa_asmbl_7868.p1, internal, 47735, 47821
Valid prediction for snap_scaffold_12-snap.1932-T1
Valid prediction for Augustus_model.g20374.t1
Valid prediction for GeneMark_model.52808_t
Valid prediction for GlimmerHMM_glimmerT_30577-T1
Valid prediction for GeneMark_model.52794_t
Valid prediction for CodingQuarry_transcript_10338-T1
Valid prediction for snap_scaffold_12-snap.1944-T1
Valid prediction for GlimmerHMM_glimmerT_30560-T1
Valid prediction for GeneMark_model.52782_t
Valid prediction for HiQ_model.g20386.t1
Valid prediction for pasa_asmbl_7859.p1
Valid prediction for snap_scaffold_12-snap.1945-T1
Valid prediction for snap_scaffold_12-snap.1954-T1
Valid prediction for GlimmerHMM_glimmerT_30579-T1
Valid prediction for snap_scaffold_12-snap.1934-T1
Valid prediction for snap_scaffold_12-snap.1937-T1
Valid prediction for GlimmerHMM_glimmerT_30558-T1
Valid prediction for GlimmerHMM_glimmerT_30559-T1
Valid prediction for snap_scaffold_12-snap.1923-T1
Valid prediction for GeneMark_model.52830_t
Valid prediction for snap_scaffold_12-snap.1951-T1
Couldn't classify 18480, 18603
Couldn't classify 29672, 29826
Sorry, prediction pasa_asmbl_7871.p1 fails validation.
(CAG)	 TG	18480-18603	GT	AGG
(AAA)	 AG	19155-19266	GT	AGG
(GCA)	 AG	19653-19809	GT	AGG
(CTC)	 AG	21649-21795	GT	AGG
(GGT)	 AG	24029-24107	GT	AAG
(GCT)	 AG	25923-25983	GT	AAG
(CCA)	 AG	26980-27041	GT	GGG
(CGG)	 AG	27832-27906	GT	ACG
(TGG)	 AG	29672-29826	CT	CCC
-recovered pasa_asmbl_7871.p1, internal, 19155, 19266
-recovered pasa_asmbl_7871.p1, internal, 19653, 19809
-recovered pasa_asmbl_7871.p1, internal, 21649, 21795
-recovered pasa_asmbl_7871.p1, internal, 24029, 24107
-recovered pasa_asmbl_7871.p1, internal, 25923, 25983
-recovered pasa_asmbl_7871.p1, internal, 26980, 27041
-recovered pasa_asmbl_7871.p1, internal, 27832, 27906
Valid prediction for GlimmerHMM_glimmerT_30568-T1
Valid prediction for GeneMark_model.52819_t
Valid prediction for GlimmerHMM_glimmerT_30562-T1
Valid prediction for GlimmerHMM_glimmerT_30566-T1
Valid prediction for HiQ_model.g20379.t1
Couldn't classify 67304, 67418
Sorry, prediction pasa_asmbl_8388.p1 fails validation.
(TCT)	 CA	67304-67418	GT	GCG
(ATC)	 AG	67775-67827	GT	ACG
(ATT)	 AG	67928-68031	GT	AAG
(GAC)	 AG	68156-68315	GA	GAG
-recovered pasa_asmbl_8388.p1, terminal, 68156, 68315
-recovered pasa_asmbl_8388.p1, internal, 67775, 67827
-recovered pasa_asmbl_8388.p1, internal, 67928, 68031
Valid prediction for Augustus_model.g20370.t1
Valid prediction for GeneMark_model.52796_t
Valid prediction for GeneMark_model.52813_t
Valid prediction for snap_scaffold_12-snap.1943-T1
Valid prediction for GeneMark_model.52838_t
Valid prediction for snap_scaffold_12-snap.1926-T1
Valid prediction for snap_scaffold_12-snap.1928-T1
Couldn't classify 36687, 36850
Couldn't classify 39086, 39149
Sorry, prediction pasa_asmbl_7869.p1 fails validation.
(CCG)	 CC	36687-36850	GT	AGG
(GTA)	 AG	37395-37506	GT	CAG
(ACA)	 AG	38711-38847	GT	ACG
(GCC)	 AG	39086-39149	AG	GCA
-recovered pasa_asmbl_7869.p1, internal, 37395, 37506
-recovered pasa_asmbl_7869.p1, internal, 38711, 38847
Valid prediction for GlimmerHMM_glimmerT_30557-T1
Valid prediction for snap_scaffold_12-snap.1947-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 17241, rend_intergenic: 10862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21137, rend_intergenic: 17425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22909, rend_intergenic: 21825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28601, rend_intergenic: 26281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31924, rend_intergenic: 29245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48224, rend_intergenic: 32661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62713, rend_intergenic: 48632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76455, rend_intergenic: 74759  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125337, rend_intergenic: 117427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135211, rend_intergenic: 130495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140256, rend_intergenic: 136027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157230, rend_intergenic: 146911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177653, rend_intergenic: 158532  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181295, rend_intergenic: 178163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187869, rend_intergenic: 183539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191000, rend_intergenic: 189305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 195958
-exon list size: 756


building trellis

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54.5    
54.6    
54.7    
54.9    
55.0    
55.1    
55.3    
55.4    
55.5    
55.7    
55.8    
55.9    
56.1    
56.2    
56.3    
56.5    
56.6    
56.7    
56.9    
57.0    
57.1    
57.3    
57.4    
57.5    
57.7    
57.8    
57.9    
58.0    
58.2    
58.3    
58.4    
58.6    
58.7    
58.8    
59.0    
59.1    
59.2    
59.4    
59.5    
59.6    
59.8    
59.9    
60.0    
60.2    
60.3    
60.4    
60.6    
60.7    
60.8    
60.9    
61.1    
61.2    
61.3    
61.5    
61.6    
61.7    
61.9    
62.0    
62.1    
62.3    
62.4    
62.5    
62.7    
62.8    
62.9    
63.1    
63.2    
63.3    
63.5    
63.6    
63.7    
63.9    
64.0    
64.1    
64.2    
64.4    
64.5    
64.6    
64.8    
64.9    
65.0    
65.2    
65.3    
65.4    
65.6    
65.7    
65.8    
66.0    
66.1    
66.2    
66.4    
66.5    
66.6    
66.8    
66.9    
67.0    
67.2    
67.3    
67.4    
67.5    
67.7    
67.8    
67.9    
68.1    
68.2    
68.3    
68.5    
68.6    
68.7    
68.9    
69.0    
69.1    
69.3    
69.4    
69.5    
69.7    
69.8    
69.9    
70.1    
70.2    
70.3    
70.4    
70.6    
70.7    
70.8    
71.0    
71.1    
71.2    
71.4    
71.5    
71.6    
71.8    
71.9    
72.0    
72.2    
72.3    
72.4    
72.6    
72.7    
72.8    
73.0    
73.1    
73.2    
73.4    
73.5    
73.6    
73.7    
73.9    
74.0    
74.1    
74.3    
74.4    
74.5    
74.7    
74.8    
74.9    
75.1    
75.2    
75.3    
75.5    
75.6    
75.7    
75.9    
76.0    
76.1    
76.3    
76.4    
76.5    
76.6    
76.8    
76.9    
77.0    
77.2    
77.3    
77.4    
77.6    
77.7    
77.8    
78.0    
78.1    
78.2    
78.4    
78.5    
78.6    
78.8    
78.9    
79.0    
79.2    
79.3    
79.4    
79.6    
79.7    
79.8    
79.9    
80.1    
80.2    
80.3    
80.5    
80.6    
80.7    
80.9    
81.0    
81.1    
81.3    
81.4    
81.5    
81.7    
81.8    
81.9    
82.1    
82.2    
82.3    
82.5    
82.6    
82.7    
82.8    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.8    
83.9    
84.0    
84.2    
84.3    
84.4    
84.6    
84.7    
84.8    
85.0    
85.1    
85.2    
85.4    
85.5    
85.6    
85.8    
85.9    
86.0    
86.1    
86.3    
86.4    
86.5    
86.7    
86.8    
86.9    
87.1    
87.2    
87.3    
87.5    
87.6    
87.7    
87.9    
88.0    
88.1    
88.3    
88.4    
88.5    
88.7    
88.8    
88.9    
89.1    
89.2    
89.3    
89.4    
89.6    
89.7    
89.8    
90.0    
90.1    
90.2    
90.4    
90.5    
90.6    
90.8    
90.9    
91.0    
91.2    
91.3    
91.4    
91.6    
91.7    
91.8    
92.0    
92.1    
92.2    
92.3    
92.5    
92.6    
92.7    
92.9    
93.0    
93.1    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.1    
94.2    
94.3    
94.5    
94.6    
94.7    
94.9    
95.0    
95.1    
95.3    
95.4    
95.5    
95.6    
95.8    
95.9    
96.0    
96.2    
96.3    
96.4    
96.6    
96.7    
96.8    
97.0    
97.1    
97.2    
97.4    
97.5    
97.6    
97.8    
97.9    
98.0    
98.2    
98.3    
98.4    
98.5    
98.7    
98.8    
98.9    
99.1    
99.2    
99.3    
99.5    
99.6    
99.7    
99.9    
-found 37 predictions from path traversal
Error with prediction: snap lend_intergenic: 17241, rend_intergenic: 10862  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21137, rend_intergenic: 17425  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22909, rend_intergenic: 21825  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28601, rend_intergenic: 26281  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 31924, rend_intergenic: 29245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 48224, rend_intergenic: 32661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62713, rend_intergenic: 48632  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76455, rend_intergenic: 74759  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125337, rend_intergenic: 117427  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135211, rend_intergenic: 130495  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140256, rend_intergenic: 136027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157230, rend_intergenic: 146911  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177653, rend_intergenic: 158532  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 181295, rend_intergenic: 178163  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187869, rend_intergenic: 183539  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191000, rend_intergenic: 189305  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 19 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12314
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support