-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_12/scaffold_12_1-156977 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for HiQ_model.g19552.t1 Valid prediction for snap_scaffold_12-snap.6-T1 Valid prediction for snap_scaffold_12-snap.32-T1 Valid prediction for CodingQuarry_transcript_10093-T1 Valid prediction for GeneMark_model.50526_t Valid prediction for GeneMark_model.50505_t add_exon() Sorry, GeneMark_model.50505_t 19486-19609-terminal-1 is invalid. Couldn't classify 86412, 86424 Sorry, prediction pasa_asmbl_8399.p1 fails validation. (AAG) CC 86412-86424 GT AGG (GGT) AG 86549-86693 GT GAG (GGA) AG 87253-87383 GT AGG (TAC) AG 87508-87665 GT AGG (ATG) AG 87857-88009 CT GAC add_exon() Sorry, pasa_asmbl_8399.p1 86549-86693-terminal-3 is invalid. -recovered pasa_asmbl_8399.p1, terminal, 86549, 86693 -recovered pasa_asmbl_8399.p1, terminal, 87857, 88009 -recovered pasa_asmbl_8399.p1, internal, 86549, 86693 -recovered pasa_asmbl_8399.p1, internal, 87253, 87383 -recovered pasa_asmbl_8399.p1, internal, 87508, 87665 Couldn't classify 122900, 122958 Sorry, prediction pasa_asmbl_8400.p1 fails validation. (CGC) GA 122900-122958 GT AGG (CCT) AG 123245-123377 GT AGG (CTC) AG 123589-123776 GT AAG (TTG) AG 124098-124101 TT GAT -recovered pasa_asmbl_8400.p1, terminal, 124098, 124101 -recovered pasa_asmbl_8400.p1, internal, 123245, 123377 -recovered pasa_asmbl_8400.p1, internal, 123589, 123776 Valid prediction for GlimmerHMM_glimmerT_29281-T1 Valid prediction for GlimmerHMM_glimmerT_29258-T1 Valid prediction for GeneMark_model.50530_t Valid prediction for HiQ_model.g19548.t1 Valid prediction for GeneMark_model.50524_t Couldn't classify 144803, 144803 Sorry, prediction CodingQuarry_transcript_10092-T1 fails validation. (AGT) CA 144803-144803 GT AAG (TGC) AG 145214-145249 GT AGG (GCC) AG 145727-145833 GT GTG (GTT) AG 145966-146053 GT TGG (GTG) AG 146804-146907 GT ACG (GAA) AG 147413-147514 GT AGG (GTT) AG 147595-147783 TT GAT -recovered CodingQuarry_transcript_10092-T1, terminal, 147595, 147783 -recovered CodingQuarry_transcript_10092-T1, internal, 145214, 145249 -recovered CodingQuarry_transcript_10092-T1, internal, 145727, 145833 -recovered CodingQuarry_transcript_10092-T1, internal, 145966, 146053 -recovered CodingQuarry_transcript_10092-T1, internal, 146804, 146907 -recovered CodingQuarry_transcript_10092-T1, internal, 147413, 147514 Valid prediction for Augustus_model.g19540.t1 Valid prediction for snap_scaffold_12-snap.31-T1 Valid prediction for CodingQuarry_transcript_10088-T1 Valid prediction for GeneMark_model.50529_t Valid prediction for GlimmerHMM_glimmerT_29278-T1 Valid prediction for snap_scaffold_12-snap.33-T1 Valid prediction for snap_scaffold_12-snap.10-T1 Valid prediction for GlimmerHMM_glimmerT_29261-T1 Valid prediction for GeneMark_model.50510_t Valid prediction for GeneMark_model.50513_t Valid prediction for Augustus_model.g19539.t1 Valid prediction for GeneMark_model.50508_t Valid prediction for CodingQuarry_transcript_10091-T1 Valid prediction for snap_scaffold_12-snap.13-T1 Valid prediction for snap_scaffold_12-snap.19-T1 Valid prediction for snap_scaffold_12-snap.27-T1 Valid prediction for snap_scaffold_12-snap.3-T1 Sorry, intron length (8) is less than minimum required (10) Valid prediction for snap_scaffold_12-snap.25-T1 Valid prediction for snap_scaffold_12-snap.15-T1 Valid prediction for GeneMark_model.50506_t Valid prediction for GeneMark_model.50519_t Valid prediction for snap_scaffold_12-snap.4-T1 Couldn't classify 75972, 76859 Sorry, prediction pasa_asmbl_8397.p1 fails validation. (TCA) CC 75972-76859 AG CCA Valid prediction for GlimmerHMM_glimmerT_29280-T1 Valid prediction for pasa_asmbl_8407.p1 Valid prediction for GlimmerHMM_glimmerT_29267-T1 Valid prediction for snap_scaffold_12-snap.29-T1 Valid prediction for GlimmerHMM_glimmerT_29260-T1 Valid prediction for GlimmerHMM_glimmerT_29277-T1 Couldn't classify 84616, 84793 Couldn't classify 86143, 86372 Sorry, prediction pasa_asmbl_8398.p1 fails validation. (TGC) CC 84616-84793 GT AGG (GAC) AG 85473-85589 GT GGG (CTC) AG 86143-86372 CT GAC -recovered pasa_asmbl_8398.p1, internal, 85473, 85589 Valid prediction for GeneMark_model.50531_t Valid prediction for GlimmerHMM_glimmerT_29269-T1 Valid prediction for GeneMark_model.50527_t Valid prediction for GlimmerHMM_glimmerT_29282-T1 Valid prediction for snap_scaffold_12-snap.35-T1 Couldn't classify 134948, 135061 Couldn't classify 135953, 136076 Sorry, prediction CodingQuarry_transcript_10090-T1 fails validation. (ATG) TT 133728-133862 GT CAG (CCG) AG 133947-134134 GT AGG (TCT) AG 134333-134405 GT TGG (AGC) AG 134561-134634 GT AGG (ATG) AG 134796-134862 GT AGG (CTC) AG 134948-135061 AC ACA (GCC) GT 135953-136076 GT CGG (TGC) AG 136158-136297 GT AGG (TCT) AG 136577-136653 GT AGG (GCG) AG 136764-136791 TT AAT -recovered CodingQuarry_transcript_10090-T1, initial, 133728, 133862 add_exon() Sorry, CodingQuarry_transcript_10090-T1 134796-134862-initial-1 is invalid. -recovered CodingQuarry_transcript_10090-T1, initial, 134796, 134862 -recovered CodingQuarry_transcript_10090-T1, terminal, 136764, 136791 -recovered CodingQuarry_transcript_10090-T1, internal, 133947, 134134 -recovered CodingQuarry_transcript_10090-T1, internal, 134333, 134405 -recovered CodingQuarry_transcript_10090-T1, internal, 134561, 134634 -recovered CodingQuarry_transcript_10090-T1, internal, 134796, 134862 -recovered CodingQuarry_transcript_10090-T1, internal, 136158, 136297 -recovered CodingQuarry_transcript_10090-T1, internal, 136577, 136653 Valid prediction for GeneMark_model.50517_t Valid prediction for snap_scaffold_12-snap.24-T1 Valid prediction for Augustus_model.g19547.t1 Valid prediction for HiQ_model.g19550.t1 Valid prediction for Augustus_model.g19535.t1 Valid prediction for pasa_asmbl_8402.p1 Valid prediction for snap_scaffold_12-snap.5-T1 Couldn't classify 144803, 144803 Sorry, prediction pasa_asmbl_8404.p1 fails validation. (AGT) CA 144803-144803 GT AAG (TGC) AG 145214-145249 GT AGG (GCC) AG 145727-145833 GT GTG (GTT) AG 145966-146053 GT TGG (GTG) AG 146804-146907 GT ACG (GAA) AG 147413-147514 GT AGG (GTT) AG 147595-147783 TT GAT -recovered pasa_asmbl_8404.p1, terminal, 147595, 147783 -recovered pasa_asmbl_8404.p1, internal, 145214, 145249 -recovered pasa_asmbl_8404.p1, internal, 145727, 145833 -recovered pasa_asmbl_8404.p1, internal, 145966, 146053 -recovered pasa_asmbl_8404.p1, internal, 146804, 146907 -recovered pasa_asmbl_8404.p1, internal, 147413, 147514 Valid prediction for pasa_asmbl_8401.p1 Valid prediction for snap_scaffold_12-snap.21-T1 Valid prediction for Augustus_model.g19551.t1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.50525_t Valid prediction for HiQ_model.g19543.t1 Valid prediction for CodingQuarry_transcript_10087-T1 Valid prediction for GeneMark_model.50520_t Valid prediction for GeneMark_model.50514_t Valid prediction for snap_scaffold_12-snap.20-T1 Valid prediction for GlimmerHMM_glimmerT_29283-T1 Valid prediction for snap_scaffold_12-snap.12-T1 Valid prediction for GeneMark_model.50509_t Couldn't classify 105159, 105323 Couldn't classify 109164, 109307 Sorry, prediction pasa_asmbl_7405.p1 fails validation. (GAG) AG 105159-105323 GT AGG (GGT) AG 106323-106655 GT AGG (GGA) AG 108267-108362 GT AGG (CCA) AG 109164-109307 GC GGG -recovered pasa_asmbl_7405.p1, internal, 105159, 105323 -recovered pasa_asmbl_7405.p1, internal, 106323, 106655 -recovered pasa_asmbl_7405.p1, internal, 108267, 108362 -recovered pasa_asmbl_7405.p1, internal, 109164, 109307 Valid prediction for snap_scaffold_12-snap.30-T1 Valid prediction for CodingQuarry_transcript_10085-T1 Valid prediction for HiQ_model.g19544.t1 Valid prediction for snap_scaffold_12-snap.14-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for GeneMark_model.50518_t Valid prediction for GeneMark_model.50507_t Couldn't classify 122711, 122808 Sorry, prediction pasa_asmbl_7402.p1 fails validation. (ATG) AA 118047-118052 GT CGG (AGC) AG 118443-118725 GT TGG (GAA) AG 118982-119126 GT CGG (GTT) AG 119420-119504 GT AGG (GTG) AG 120992-121097 GT TCG (GCT) AG 121191-121330 GT CGG (GGC) AG 121720-121917 GT TGG (TGT) AG 122303-122477 GT AGG (GGG) AG 122711-122808 GG GAG -recovered pasa_asmbl_7402.p1, initial, 118047, 118052 -recovered pasa_asmbl_7402.p1, internal, 118443, 118725 -recovered pasa_asmbl_7402.p1, internal, 118982, 119126 -recovered pasa_asmbl_7402.p1, internal, 119420, 119504 -recovered pasa_asmbl_7402.p1, internal, 120992, 121097 -recovered pasa_asmbl_7402.p1, internal, 121191, 121330 -recovered pasa_asmbl_7402.p1, internal, 121720, 121917 -recovered pasa_asmbl_7402.p1, internal, 122303, 122477 Valid prediction for snap_scaffold_12-snap.16-T1 Valid prediction for GlimmerHMM_glimmerT_29270-T1 Valid prediction for GeneMark_model.50528_t Valid prediction for GlimmerHMM_glimmerT_29279-T1 Valid prediction for snap_scaffold_12-snap.17-T1 Valid prediction for CodingQuarry_transcript_10084-T1 Valid prediction for GlimmerHMM_glimmerT_29263-T1 Valid prediction for snap_scaffold_12-snap.8-T1 Couldn't classify 136312, 136467 Sorry, prediction snap_scaffold_12-snap.1-T1 fails validation. (ATG) AG 130097-130222 GT AGG (GAG) AG 130499-130552 GT TGG (AAA) AG 130668-130736 GT ATG (CCA) AG 130832-130962 GT AGG (GAG) AG 131769-131932 GT AGG (CTT) AG 134651-134705 GT AGG (AGC) AG 135254-135371 GT GAG (AGA) AG 135386-135695 GT CTG (GTC) AG 136312-136467 GT GAG -recovered snap_scaffold_12-snap.1-T1, initial, 130097, 130222 -recovered snap_scaffold_12-snap.1-T1, internal, 130097, 130222 -recovered snap_scaffold_12-snap.1-T1, internal, 130499, 130552 -recovered snap_scaffold_12-snap.1-T1, internal, 130668, 130736 -recovered snap_scaffold_12-snap.1-T1, internal, 130832, 130962 -recovered snap_scaffold_12-snap.1-T1, internal, 131769, 131932 -recovered snap_scaffold_12-snap.1-T1, internal, 134651, 134705 -recovered snap_scaffold_12-snap.1-T1, internal, 135254, 135371 -recovered snap_scaffold_12-snap.1-T1, internal, 135386, 135695 -recovered snap_scaffold_12-snap.1-T1, internal, 136312, 136467 Valid prediction for GlimmerHMM_glimmerT_29274-T1 Valid prediction for HiQ_model.g19534.t1 Valid prediction for snap_scaffold_12-snap.23-T1 Valid prediction for GlimmerHMM_glimmerT_29262-T1 Valid prediction for GlimmerHMM_glimmerT_29272-T1 Valid prediction for GlimmerHMM_glimmerT_29271-T1 Valid prediction for pasa_asmbl_7413.p1 Valid prediction for snap_scaffold_12-snap.28-T1 Valid prediction for snap_scaffold_12-snap.18-T1 Valid prediction for CodingQuarry_transcript_10089-T1 Valid prediction for snap_scaffold_12-snap.26-T1 Valid prediction for HiQ_model.g19542.t1 Valid prediction for GeneMark_model.50521_t Valid prediction for snap_scaffold_12-snap.9-T1 Valid prediction for GeneMark_model.50511_t Couldn't classify 47721, 47812 Sorry, prediction pasa_asmbl_7409.p1 fails validation. (TTC) GA 47721-47812 GT CCG (AGC) AG 48380-48437 GT AGG (GTC) AG 48625-48765 GT AGG (GTG) AG 49219-49341 GT CTG (GTA) AG 49741-49840 GT AGG (TGG) AG 49953-50086 GT AGG (GTC) AG 50834-51078 GT AGG (GGG) AG 51298-51374 GT CAG (AGC) AG 51446-51597 GT AGG (TGT) AG 51893-51999 GT AGG (TGA) AG 52334-52467 GT GGG (GTC) AG 52545-52717 GT AGG (AAC) AG 52930-53016 GT AGG (GCC) AG 53818-53973 GT AGG (GGG) AG 54084-54209 GT CTG (GAT) AG 54397-54504 GT AGG (GGT) AG 55255-55374 GT AGG (GAG) AG 55581-55742 GT AGG (GAG) AG 55843-56034 GC AGG -recovered pasa_asmbl_7409.p1, terminal, 55843, 56034 -recovered pasa_asmbl_7409.p1, internal, 48380, 48437 -recovered pasa_asmbl_7409.p1, internal, 48625, 48765 -recovered pasa_asmbl_7409.p1, internal, 49219, 49341 -recovered pasa_asmbl_7409.p1, internal, 49741, 49840 -recovered pasa_asmbl_7409.p1, internal, 49953, 50086 -recovered pasa_asmbl_7409.p1, internal, 50834, 51078 -recovered pasa_asmbl_7409.p1, internal, 51298, 51374 -recovered pasa_asmbl_7409.p1, internal, 51446, 51597 -recovered pasa_asmbl_7409.p1, internal, 51893, 51999 -recovered pasa_asmbl_7409.p1, internal, 52334, 52467 -recovered pasa_asmbl_7409.p1, internal, 52545, 52717 -recovered pasa_asmbl_7409.p1, internal, 52930, 53016 -recovered pasa_asmbl_7409.p1, internal, 53818, 53973 -recovered pasa_asmbl_7409.p1, internal, 54084, 54209 -recovered pasa_asmbl_7409.p1, internal, 54397, 54504 -recovered pasa_asmbl_7409.p1, internal, 55255, 55374 -recovered pasa_asmbl_7409.p1, internal, 55581, 55742 -recovered pasa_asmbl_7409.p1, internal, 55843, 56034 Valid prediction for GlimmerHMM_glimmerT_29264-T1 Valid prediction for GlimmerHMM_glimmerT_29259-T1 Valid prediction for CodingQuarry_transcript_10083-T1 Valid prediction for snap_scaffold_12-snap.7-T1 Valid prediction for pasa_asmbl_7407.p1 Valid prediction for GeneMark_model.50512_t Valid prediction for Augustus_model.g19537.t1 Valid prediction for pasa_asmbl_7406.p1 Valid prediction for Augustus_model.g19553.t1 Valid prediction for GlimmerHMM_glimmerT_29266-T1 Valid prediction for GlimmerHMM_glimmerT_29273-T1 Valid prediction for GeneMark_model.50532_t Valid prediction for snap_scaffold_12-snap.2-T1 Valid prediction for GeneMark_model.50515_t Valid prediction for snap_scaffold_12-snap.22-T1 Valid prediction for CodingQuarry_transcript_10086-T1 Valid prediction for Augustus_model.g19549.t1 Valid prediction for GlimmerHMM_glimmerT_29275-T1 Valid prediction for GeneMark_model.50516_t Valid prediction for Augustus_model.g19545.t1 Valid prediction for HiQ_model.g19536.t1 Valid prediction for Augustus_model.g19538.t1 Valid prediction for snap_scaffold_12-snap.34-T1 Valid prediction for GlimmerHMM_glimmerT_29276-T1 Couldn't classify 130832, 130963 Sorry, prediction pasa_asmbl_7400.p1 fails validation. (ATG) AG 126944-127074 GT CAG (ACA) AG 127429-127609 GT AGG (CAA) AG 128416-128526 GT AGG (ATG) AG 130097-130222 GT AGG (GAG) AG 130499-130552 GT TGG (AAA) AG 130668-130736 GT ATG (CCA) AG 130832-130963 TA GGT -recovered pasa_asmbl_7400.p1, initial, 126944, 127074 -recovered pasa_asmbl_7400.p1, initial, 130097, 130222 -recovered pasa_asmbl_7400.p1, internal, 126944, 127074 -recovered pasa_asmbl_7400.p1, internal, 127429, 127609 -recovered pasa_asmbl_7400.p1, internal, 128416, 128526 -recovered pasa_asmbl_7400.p1, internal, 130097, 130222 -recovered pasa_asmbl_7400.p1, internal, 130499, 130552 -recovered pasa_asmbl_7400.p1, internal, 130668, 130736 Valid prediction for HiQ_model.g19541.t1 Valid prediction for GlimmerHMM_glimmerT_29265-T1 Valid prediction for pasa_asmbl_7412.p1 Couldn't classify 111653, 111822 Sorry, prediction pasa_asmbl_8358.p1 fails validation. (TGT) GG 111653-111822 GT AGG (AAC) AG 112022-112293 GT AGG (GCT) AG 115170-115423 GT AGG (GCC) AG 115554-115804 GT AGG (GCA) AG 116175-116355 CT GAC -recovered pasa_asmbl_8358.p1, terminal, 116175, 116355 -recovered pasa_asmbl_8358.p1, internal, 112022, 112293 -recovered pasa_asmbl_8358.p1, internal, 115170, 115423 -recovered pasa_asmbl_8358.p1, internal, 115554, 115804 Valid prediction for Augustus_model.g19546.t1 Valid prediction for GlimmerHMM_glimmerT_29268-T1 Valid prediction for snap_scaffold_12-snap.11-T1 Valid prediction for GeneMark_model.50522_t -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 38931, rend_intergenic: 30600 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52040, rend_intergenic: 46587 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 62401, rend_intergenic: 55401 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66129, rend_intergenic: 65411 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77893, rend_intergenic: 76250 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86251, rend_intergenic: 79338 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103581, rend_intergenic: 100957 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 104405, rend_intergenic: 103599 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108239, rend_intergenic: 104955 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 124341, rend_intergenic: 120608 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 136791, rend_intergenic: 134933 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 156977 -exon list size: 458 building trellis 0.2 0.4 0.7 0.9 1.1 1.3 1.5 1.7 2.0 2.2 2.4 2.6 2.8 3.0 3.3 3.5 3.7 3.9 4.1 4.3 4.6 4.8 5.0 5.2 5.4 5.7 5.9 6.1 6.3 6.5 6.7 7.0 7.2 7.4 7.6 7.8 8.0 8.3 8.5 8.7 8.9 9.1 9.3 9.6 9.8 10.0 10.2 10.4 10.7 10.9 11.1 11.3 11.5 11.7 12.0 12.2 12.4 12.6 12.8 13.0 13.3 13.5 13.7 13.9 14.1 14.3 14.6 14.8 15.0 15.2 15.4 15.7 15.9 16.1 16.3 16.5 16.7 17.0 17.2 17.4 17.6 17.8 18.0 18.3 18.5 18.7 18.9 19.1 19.3 19.6 19.8 20.0 20.2 20.4 20.7 20.9 21.1 21.3 21.5 21.7 22.0 22.2 22.4 22.6 22.8 23.0 23.3 23.5 23.7 23.9 24.1 24.3 24.6 24.8 25.0 25.2 25.4 25.7 25.9 26.1 26.3 26.5 26.7 27.0 27.2 27.4 27.6 27.8 28.0 28.3 28.5 28.7 28.9 29.1 29.3 29.6 29.8 30.0 30.2 30.4 30.7 30.9 31.1 31.3 31.5 31.7 32.0 32.2 32.4 32.6 32.8 33.0 33.3 33.5 33.7 33.9 34.1 34.3 34.6 34.8 35.0 35.2 35.4 35.7 35.9 36.1 36.3 36.5 36.7 37.0 37.2 37.4 37.6 37.8 38.0 38.3 38.5 38.7 38.9 39.1 39.3 39.6 39.8 40.0 40.2 40.4 40.7 40.9 41.1 41.3 41.5 41.7 42.0 42.2 42.4 42.6 42.8 43.0 43.3 43.5 43.7 43.9 44.1 44.3 44.6 44.8 45.0 45.2 45.4 45.7 45.9 46.1 46.3 46.5 46.7 47.0 47.2 47.4 47.6 47.8 48.0 48.3 48.5 48.7 48.9 49.1 49.3 49.6 49.8 50.0 50.2 50.4 50.7 50.9 51.1 51.3 51.5 51.7 52.0 52.2 52.4 52.6 52.8 53.0 53.3 53.5 53.7 53.9 54.1 54.3 54.6 54.8 55.0 55.2 55.4 55.7 55.9 56.1 56.3 56.5 56.7 57.0 57.2 57.4 57.6 57.8 58.0 58.3 58.5 58.7 58.9 59.1 59.3 59.6 59.8 60.0 60.2 60.4 60.7 60.9 61.1 61.3 61.5 61.7 62.0 62.2 62.4 62.6 62.8 63.0 63.3 63.5 63.7 63.9 64.1 64.3 64.6 64.8 65.0 65.2 65.4 65.7 65.9 66.1 66.3 66.5 66.7 67.0 67.2 67.4 67.6 67.8 68.0 68.3 68.5 68.7 68.9 69.1 69.3 69.6 69.8 70.0 70.2 70.4 70.7 70.9 71.1 71.3 71.5 71.7 72.0 72.2 72.4 72.6 72.8 73.0 73.3 73.5 73.7 73.9 74.1 74.3 74.6 74.8 75.0 75.2 75.4 75.7 75.9 76.1 76.3 76.5 76.7 77.0 77.2 77.4 77.6 77.8 78.0 78.3 78.5 78.7 78.9 79.1 79.3 79.6 79.8 80.0 80.2 80.4 80.7 80.9 81.1 81.3 81.5 81.7 82.0 82.2 82.4 82.6 82.8 83.0 83.3 83.5 83.7 83.9 84.1 84.3 84.6 84.8 85.0 85.2 85.4 85.7 85.9 86.1 86.3 86.5 86.7 87.0 87.2 87.4 87.6 87.8 88.0 88.3 88.5 88.7 88.9 89.1 89.3 89.6 89.8 90.0 90.2 90.4 90.7 90.9 91.1 91.3 91.5 91.7 92.0 92.2 92.4 92.6 92.8 93.0 93.3 93.5 93.7 93.9 94.1 94.3 94.6 94.8 95.0 95.2 95.4 95.7 95.9 96.1 96.3 96.5 96.7 97.0 97.2 97.4 97.6 97.8 98.0 98.3 98.5 98.7 98.9 99.1 99.3 99.6 99.8 -found 24 predictions from path traversal Error with prediction: snap lend_intergenic: 38931, rend_intergenic: 30600 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 52040, rend_intergenic: 46587 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 62401, rend_intergenic: 55401 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 66129, rend_intergenic: 65411 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 77893, rend_intergenic: 76250 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86251, rend_intergenic: 79338 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103581, rend_intergenic: 100957 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 104405, rend_intergenic: 103599 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 108239, rend_intergenic: 104955 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 124341, rend_intergenic: 120608 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 136791, rend_intergenic: 134933 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 23 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 22198 -exon list size: 16 building trellis 5.6 11.1 16.7 22.2 27.8 33.3 38.9 44.4 50.0 55.6 61.1 66.7 72.2 77.8 83.3 88.9 94.4 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 21508 -exon list size: 10 building trellis 8.3 16.7 25.0 33.3 41.7 50.0 58.3 66.7 75.0 83.3 91.7 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 21471 -exon list size: 9 building trellis 9.1 18.2 27.3 36.4 45.5 54.5 63.6 72.7 81.8 90.9 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 21432 -exon list size: 8 building trellis 10.0 20.0 30.0 40.0 50.0 60.0 70.0 80.0 90.0 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 21393 -exon list size: 7 building trellis 11.1 22.2 33.3 44.4 55.6 66.7 77.8 88.9 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 21282 -exon list size: 6 building trellis 12.5 25.0 37.5 50.0 62.5 75.0 87.5 -found 1 predictions from path traversal GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -building DP trellis -building trellis in range 1 - 20366 -exon list size: 2 building trellis 25.0 50.0 75.0 -found 1 predictions from path traversal -reporting highest scoring path thru the trellis. -found 0 predictions persist after filtering for low support -no exons in range 1 - 19636