-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1199

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_1199-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_62518-T1
Valid prediction for Augustus_model.g41575.t1
Couldn't classify 14, 31
Couldn't classify 2121, 2292
Sorry, prediction GeneMark_model.109024_t fails validation.
(GGA)	 AG	14-31	GT	AGG
(AGG)	 AG	58-72	GT	GAG
(GAG)	 AG	89-100	GT	AGG
(AGA)	 AG	121-201	GC	CAG
(AGA)	 AG	255-374	GT	AGG
(AGG)	 AG	704-714	GT	AGG
(AGA)	 AG	2121-2292	GT	ATG
-recovered GeneMark_model.109024_t, internal, 14, 31
-recovered GeneMark_model.109024_t, internal, 58, 72
-recovered GeneMark_model.109024_t, internal, 89, 100
-recovered GeneMark_model.109024_t, internal, 121, 201
-recovered GeneMark_model.109024_t, internal, 255, 374
-recovered GeneMark_model.109024_t, internal, 704, 714
-recovered GeneMark_model.109024_t, internal, 2121, 2292

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3000
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support