-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1198

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2626, 2689
Sorry, prediction GeneMark_model.109023_t fails validation.
(ATG)	 TG	1688-1707	GT	GAG
(GAG)	 AG	2212-2223	GT	GAG
(AGT)	 AG	2249-2266	GT	GGG
(AGG)	 AG	2363-2410	GT	CCG
(CAC)	 AG	2626-2689	GT	AGG
-recovered GeneMark_model.109023_t, initial, 1688, 1707
-recovered GeneMark_model.109023_t, internal, 2212, 2223
-recovered GeneMark_model.109023_t, internal, 2249, 2266
-recovered GeneMark_model.109023_t, internal, 2363, 2410
-recovered GeneMark_model.109023_t, internal, 2626, 2689

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3000
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support