-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_1196

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 129, 274
Couldn't classify 1704, 1712
Sorry, prediction GeneMark_model.109021_t fails validation.
(CTG)	 AG	129-274	GT	GCG
(AGA)	 AG	520-729	GT	AGG
(GGT)	 AG	762-773	GT	GGG
(GAG)	 AG	800-814	GT	TTG
(AGG)	 AG	842-856	GT	AGG
(AGA)	 AG	883-906	GT	GGG
(AGA)	 AG	930-944	GT	GGG
(GGA)	 AG	983-1057	GT	GAG
(AGA)	 AG	1084-1101	GT	GGG
(GGA)	 AG	1128-1217	GT	GGG
(AGA)	 AG	1241-1300	GT	GGG
(AGG)	 AG	1321-1347	GT	GAG
(GAG)	 AG	1522-1527	GT	GCG
(AAC)	 AG	1704-1712	GT	AGG
-recovered GeneMark_model.109021_t, internal, 129, 274
-recovered GeneMark_model.109021_t, internal, 520, 729
-recovered GeneMark_model.109021_t, internal, 762, 773
-recovered GeneMark_model.109021_t, internal, 800, 814
-recovered GeneMark_model.109021_t, internal, 842, 856
-recovered GeneMark_model.109021_t, internal, 883, 906
-recovered GeneMark_model.109021_t, internal, 930, 944
-recovered GeneMark_model.109021_t, internal, 983, 1057
-recovered GeneMark_model.109021_t, internal, 1084, 1101
-recovered GeneMark_model.109021_t, internal, 1128, 1217
-recovered GeneMark_model.109021_t, internal, 1241, 1300
-recovered GeneMark_model.109021_t, internal, 1321, 1347
-recovered GeneMark_model.109021_t, internal, 1522, 1527
-recovered GeneMark_model.109021_t, internal, 1704, 1712

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 3000
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support